Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq63 235 4e-57 seq9 140 2e-28 >seq63 Length=10485012 Score = 235 bits (260), Expect = 4e-57 Identities = 364/515 (71%), Gaps = 6/515 (1%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| || || || || ||||| | |||||| | || | ||||| |||||| Sbjct 8862408 GGGAAAGGC-CTTGGTTCTTGCTGAAGCTGCATTTTCAGCAGCTCAATGTGATTCAGGTA 8862466 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | || || ||||||| || || || || || || || | ||| || |||| ||| || Sbjct 8862467 AATATGTGCATCTCCCAAAGTATGTACGAAGTCACCTGGCTTTAGTCCTGTGATGTGTGC 8862526 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||| ||||| || | |||||||||||||| ||||| || || || |||||||| Sbjct 8862527 AATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 8862586 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 ||| ||||||||||| ||||| || || || || |||| ||| ||||||| || | Sbjct 8862587 CCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCATTCACCACGCAAAACTGGCAGAG 8862646 Query 27345 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 27404 ||| ||||||||||| || ||| | || | ||||| || |||||| | | || ||| Sbjct 8862647 GGCATGGCACGGAGGGAGGGCCGTCAGAGGAATATCTTTTGGATTCCAGCCACTCAGGAT 8862706 Query 27405 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 27464 ||| | ||||| | |||||| | |||| ||| | | | |||||||| || || || Sbjct 8862707 GATTCTTCTGTCGTTGGGGTTGGT-TTGATTGTGTCAATGACCTTTTGCAGTTGGTCTAC 8862765 Query 27465 CCCCATCCCCGAGTAGTCT--ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAT 27522 || || || || ||| | ||| | || |||| ||||| || |||||| |||| Sbjct 8862766 TCCTTGACCTGAATAATCTGAATCCT--TATCTATGTATTCTGCCCCAAAATGCTTCCAC 8862823 Query 27523 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 27582 || || | || || || || | || || |||| |||| ||| ||| ||||| Sbjct 8862824 TGAAAGACATAAACTGGGCCTAAATCCCCTTCTTTTCTGTTGGAGAACCCCAAGCTGTCC 8862883 Query 27583 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | ||||||| || || ||||| |||||||| || Sbjct 8862884 TAGAAGTCTCGAGACCCATTGGCATCCCAGATTTT 8862918 >seq9 Length=27295742 Score = 140 bits (154), Expect = 2e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 15743172 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGG 15743231 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| ||||| ||||||||||| ||||| || || ||||| |||| Sbjct 15743232 CACGCCCAGGCCCATATCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCAC 15743291 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||||||||| || ||||| || Sbjct 15743292 CACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATCAG 15743336 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||||||||| || || || || || || || | || || |||| Sbjct 15745768 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 15745827 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | |||| ||| ||| ||||||| ||||||| || || ||||| |||||||| | Sbjct 15745828 CTCTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTT 15745887 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || || || | |||||| || || Sbjct 15745888 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTTGTAGATCC 15745927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369472150279073