Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq403 181 2e-40 seq218 129 8e-25 >seq403 Length=533493 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | ||||||||||| |||| ||| ||| ||||| || || |||||||| Sbjct 188589 ATGAGCCGGCTCGTCTGGAACAGACGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGC 188648 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||| ||||| ||||||| |||||||| ||||| |||||||| || ||||| Sbjct 188649 ACATCACACACTCTGTTATGTTCCCGCAGCCAGATCGTGGCATACATCATCAGACCAGGC 188708 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| | || || || ||||| | |||| || ||| || || | ||| || Sbjct 188709 ACCAGCCCAAAGACTTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGGGGTGGG 188768 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||||| |||||||| | ||| ||||||| || || ||||| | | Sbjct 188769 TAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACC 188828 Query 9484 TGA 9486 ||| Sbjct 188829 TGA 188831 Score = 170 bits (188), Expect = 3e-37 Identities = 219/302 (73%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| |||||| | |||| ||||||||||| | Sbjct 186990 GAACACTGAATGCAGTAAAAGGACAGCCCTTCACGTTGTTGCAGATGAGAGACTGAATGG 187049 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| ||||| || || ||||||||||| Sbjct 187050 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCGAAAGTACTAGGCTTCCAGTAGT 187109 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || |||||| || |||| || ||||| | |||||| || || |||| || | Sbjct 187110 CAGGCGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTA 187169 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| |||||||| |||| || | | |||| Sbjct 187170 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGGAGGGCTGGATACA 187229 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || |||| ||||| ||||||||| | | ||||| || ||||| |||| Sbjct 187230 GCTCCATGGCATCGATATCTCCATAAAGGGCCTCTAACCCTGCAGCCATTTCCTTCTCTC 187289 Query 8583 CT 8584 || Sbjct 187290 CT 187291 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| | || |||||| ||| ||| | || Sbjct 189602 TCTTACCCCATGGCCCAGTCCTTTGGTGAAACCTGGCCCTCGCTTATGATCTGTCTTGAA 189661 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| ||||||| |||||||| | || |||||||||||||| Sbjct 189662 AAATTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGGGATC 189721 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 189722 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTAGAATCAGGAAGCTC 189781 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 189782 TTTCTTGCCTGAAAAATGAGAA 189803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 202/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | |||| ||||| || | |||||||| || || | Sbjct 187995 CTTACCCTGCCAGCAATTTGCCTGCTGAAGGATTCCACAAACTGGGTAAGCCCATGTTCC 188054 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 | ||||| || ||||||||||| || | | | | |||| | ||| || | Sbjct 188055 AGCAGTATAGAGTTGTTGTAGACAAACTGTTGGAAATTGTACTCCTGGTCATCTATTTGC 188114 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || | || |||| || | ||||||||| || | | |||||||||| | | ||||| Sbjct 188115 AAAGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATACGG 188174 Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 |||||||||||||| | | ||| ||||| || || | |||| ||||| || || Sbjct 188175 TTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGCTTGAAGTG 188233 Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239 ||||| || | ||||| || || | | || | | ||| || |||||||| || || Sbjct 188234 ATAGCCACTCAAGTGCTGTACATAGT-CTTCAATCACAATCTTAATGGTTTCTCCTAT 188290 >seq218 Length=3091361 Score = 129 bits (142), Expect = 8e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || |||||||| |||||||||||| | || | Sbjct 70553 TCTTGACCATATTGAAGCCCATCTCACCACCAAAGGTGCTCGGCTTCCAGTACTCTGGAG 70612 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 70613 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 70672 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||||||| || ||| |||| | | || | ||| | ||||| Sbjct 70673 TCTCCCCAAAGATGGAGTTGGGATGGCACTTCTCCAGAAGCAGCCCTGGGTAGAACTCCA 70732 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || || || | || || || |||||| | || ||| Sbjct 70733 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCTGCTGCAATCTCCGTCTCCCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716807056848320