Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mustela_20putorius_20furo_20[refseq_20GCF_5F000215625.1_202011-06- 02] 7,783 sequences; 2,410,879,678 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq65 158 3e-33 seq161 156 1e-32 seq323 154 4e-32 seq101 154 4e-32 seq2 154 4e-32 seq50 141 2e-28 seq39 141 2e-28 seq237 136 1e-26 seq32 111 4e-19 seq43 87.8 4e-12 seq296 84.2 5e-11 >seq65 Length=10028950 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || |||||||| || ||| Sbjct 4317959 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 4318016 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || || || | ||||| || ||||||||||| ||||| || ||||||| Sbjct 4318017 ACACCATTGAAAATGTAAAGGACAAGATCCAAGACAAAGAAGGCATCCCCCCTGACCAGC 4318076 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | |||||||| || || || |||||||||||||| | |||||| | ||||| ||| Sbjct 4318077 AGAGGCTTATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTTTCTGATTACAACA 4318136 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||||||| || Sbjct 4318137 TCCAGAAAGAGTCCACCCTGCATCTGGT 4318164 Score = 116 bits (128), Expect = 9e-21 Identities = 130/171 (76%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| | ||||| | ||||||||||| || || || | || || |||||||| |||| Sbjct 4317513 AGGTCAGAATGC---AGATTTTCGTGAAGACCCTGACCTGCAAGACCATCACCCTGGAGG 4317569 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||||||| || || || ||||| || |||||||| || || Sbjct 4317570 TGG--AGCCCAGTGACACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCAT 4317627 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||| || |||||||| | |||||||| || || || ||||| |||||||| Sbjct 4317628 CCCCCCTGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGG 4317678 >seq161 Length=5000004 Score = 156 bits (172), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | ||||||||||| || || || || || || |||||||| |||| Sbjct 409882 AGGTCAAAATGC---AGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 409938 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||||||| || || ||| ||||| || || || || || || Sbjct 409939 TGG--AGCCCAGTGACACCATCGAAAATGTGAAAGCCAAGATCCAAGATAAGGAGGGCAT 409996 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | |||||||| || || || ||||| |||||||| | ||||| Sbjct 409997 CCCCCCTGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACTCT 410056 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | | ||||| ||| |||| ||||| ||||| || || || ||| Sbjct 410057 TTCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCTGGTT 410099 >seq323 Length=1159590 Score = 154 bits (170), Expect = 4e-32 Identities = 169/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | ||||||||||| || || || || || || |||||||| |||| Sbjct 303627 AGGTCAAAATGC---AGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 303571 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| || || || || || || Sbjct 303570 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCAT 303513 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | |||||||| || || || ||||| |||||||| | ||||| Sbjct 303512 CCCCCCCGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCT 303453 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 303452 TTCTGATTACAACATCCAGAAAGAGTCCACTCTGCACCTGGT 303411 >seq101 Length=7325712 Score = 154 bits (170), Expect = 4e-32 Identities = 168/220 (76%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | ||||||||||| || || || || || || |||||||| |||| Sbjct 128028 AGGTCAAAATGC---AGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 127972 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 ||| ||||||| | || |||||| || || ||||| || |||||||| || |||| Sbjct 127971 TGG--AGCTCAGTGA-CACCGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATCC 127915 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | || |||||||| | |||||||| || || || ||||| |||||||| | |||||| Sbjct 127914 CCCCCGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTT 127855 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| ||| |||| ||||| || || ||||| || || Sbjct 127854 CTGATTACAACATCCAGAAAGAGTCCACTCTGCACCTGGT 127815 >seq2 Length=40953715 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || || || || || || |||||||| ||| ||| || Sbjct 19232594 CAGATTTTCGTAAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTCGGAT 19232535 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||||||| |||||||| ||||| || ||||| Sbjct 19232534 ACAATAGAAAATGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAGCAG 19232475 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 19232474 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 19232415 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 19232414 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 19232380 >seq50 Length=12588045 Score = 141 bits (156), Expect = 2e-28 Identities = 166/222 (75%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | ||||||||||| || || || || || || |||||| | ||| Sbjct 11770864 AGGTCAAAATGC---AGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGAAGG 11770808 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || || |||||||||||||| || || ||||| || || ||||| || || Sbjct 11770807 TGGA--GCCCAATGACACCATCGAGAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCAT 11770750 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| | || ||||| | |||||||| ||||| || ||||| |||||||| ||||| Sbjct 11770749 CCCCCACGATCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACACTCT 11770690 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 11770689 TTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 11770648 >seq39 Length=13401118 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 1513287 CAGATCTTCGTGAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1513344 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 1513345 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 1513404 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| || ||||| | || || |||| || ||| Sbjct 1513405 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAGGATGGGCGCACCCTGTCCGACTACAACA 1513464 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 1513465 TCCAGAAGGAGTCGACTCTGCACCTGGTCCTCCGCCTCAGA 1513505 >seq237 Length=2526385 Score = 136 bits (150), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCA 177987 |||||||| || || || || || || |||||||| |||||||| || ||| |||||| Sbjct 2104016 TTCGTGAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTGACACCA 2103959 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 ||||||| || ||| |||||||| || ||||| || ||||| || |||||||| | Sbjct 2103958 TCGAGAATGTGAAAGGGAAGATTCAAGAGAAAGAGGGCATCCCCCCTGACCAGCAGAGGT 2103899 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | ||||| ||||| |||||||| || ||||| | || || |||| || ||| |||| | Sbjct 2103898 TGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCCGACTACAACATCCAGA 2103839 Query 178108 AAGAATCAACACTGCATCTTGTTTTG 178133 | || || || || || || ||| || Sbjct 2103838 AGGAGTCCACTCTTCACCTGGTTCTG 2103813 >seq32 Length=14820502 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || ||||| || || ||||| ||| |||| ||| || ||| Sbjct 8777213 CAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACTCTCAAGGTTGAACCCTTAGAT 8777154 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || || ||||||||||| || |||||||| ||||| || ||||| Sbjct 8777153 ACAATAGAAGATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 8777094 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| ||||| || || || | | ||||||||| ||||| | | ||| || | Sbjct 8777093 AGACCGATCTTTGCTGGCAAGCTATTGGAAGATGGACATACTCTGCCTGGTTACAATGCT 8777034 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || | || ||| |||| Sbjct 8777033 CAAAAGGAGTCTGCTCTTCATTTTGT 8777008 >seq43 Length=13120276 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || | || | || ||||||||| || | || | ||| Sbjct 1400378 CAGATCTTCGTGAAAACCCTGATGGGCAGGACCATCACCCTCAAGTTTGACCCCAGTGAC 1400437 Query 177984 ACCATCGAGAACGTCAAA-CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||| ||||| |||||| | ||| || || ||||| || || ||||| | || ||||| Sbjct 1400438 ACCACTGAGAATGTCAAAGCCAAAAATCCAAGACAAGGAGGGGATCCC-CTTGA-CAGCA 1400495 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | || || || || || |||||| |||||||| || ||||| | ||||| || | Sbjct 1400496 GCATCTGATTTTAGCGGGCAAACAGTGAGAAGATGGCAGCACTCTGTCAGATTACAATAT 1400555 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || | ||||| |||| Sbjct 1400556 CCGGAAAGAGTCCAGCCTGCA-CTTG 1400580 >seq296 Length=1498662 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 |||||| | ||||| || | || ||| || ||| || ||| ||| |||||| || Sbjct 1491935 ATTTTCATAAAAAC-CTTATGGGGAAA--GACCACTTTCCAGGATGAACCCTCAGATACA 1491991 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || | || || ||||||| ||| ||||||||||| ||||| |||||||| || Sbjct 1491992 ATAGAAACTGTAAAGGCCAAGATTCGGGATAAAGAAGGAATTCCTCCTGACCAGCAGAGA 1492051 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||| || || || || || ||||||||| | | || || | | ||| | || Sbjct 1492052 CTGATCTCTGCTGGCAAGCACCTGGAAGATGGACGTATTC-TGTCTGGCACAACATTTAA 1492110 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || |||||| ||||||| Sbjct 1492111 AAGGAGTCCACTCTTCATCTTTGGCTGAGACT 1492142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203611164300902