Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18010 140 4e-28 seq9940 125 9e-24 seq13804 116 5e-21 seq10479 111 2e-19 seq7184 98.7 1e-15 seq2520 86.0 8e-12 seq6429 84.2 3e-11 >seq18010 Length=2831715 Score = 140 bits (154), Expect = 4e-28 Identities = 453/698 (65%), Gaps = 23/698 (3%) Strand=Plus/Minus Query 33318 AAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACA 33377 || || || || || | ||| ||| ||||| |||||||| ||||| ||| | || Sbjct 1771638 AAGAAGTTCGTCTTCCTTTCTCGTGAAATATTATCCATGAAGTCAAATGGACTTTCTACT 1771579 Query 33378 TTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATAT 33437 | ||| || |||| |||| || | | ||| || | |||||||| || || Sbjct 1771578 CGGAAAACCTTGCTAAAACCCAGCTCCAGCCTGAGTCTGTCAGTCACGAATTCAATGTAA 1771519 Query 33438 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAAT 33497 ||||||| |||||||| || |||| || ||||| | ||| | || || || Sbjct 1771518 CCCTTCATCAGAGTGCAATTCATCCCAATGAAATTCACTGGCAAGGCCTCTGTGAGGAAC 1771459 Query 33498 TCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTC--GGTG 33555 || || || || || || || || || || ||| || ||| | || ||| Sbjct 1771458 TCCTGCTCTATCCCAACAGCCTTGGTGATGATC--TCTTTCGCCCTCTACTCTGCAGGTT 1771401 Query 33556 GATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTAC 33615 || | | || | ||||||| || || || || ||||||| |||||| ||||| | Sbjct 1771400 TGTGCAGCAGGTGACTGAACATCAGGCAGGCAAAGTCTCAGTGCAAACCCTCTTCTCTGC 1771341 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 | | | || ||| || || |||| || | || ||| | | || || ||||| |||| Sbjct 1771340 CACTCAGTTGGTTGGAGAA--TGAGGCCAGTCACCAGGTCTCATTTCTTGAGCCAGAATA 1771283 Query 33676 TGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCT 33735 | | || |||||||||||||||| ||||| ||| | | || | | Sbjct 1771282 TCGGCGC-----------AAAAGAAGATTCCTTCCACTGCCTTAAACCCTACAACACGTT 1771234 Query 33736 CTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33792 ||||||| |||| |||| ||||| ||||| | | || | || || Sbjct 1771233 CTCCATAGGCGGCCTCTTTGTCCCTGATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTG 1771174 Query 33793 -CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 33851 ||||||||||||| || | ||| || ||||| | | |||| | |||||||| Sbjct 1771173 GCACAAGGCATCGTCTCCACGGCGTTGAAGAGCAACTCCCTTTCCTGGGCATCTTTAATG 1771114 Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 | ||| || || | ||||| |||||||| ||||| |||||||| ||||| || || || Sbjct 1771113 TCAGTGTCAATGAGGAGACTGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAG 1771054 Query 33912 CCGTAGAAACATCTAGCC-TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATT 33970 | ||||||||| | |||| ||||| ||||| |||||| | ||| || || | || || Sbjct 1771053 CTGTAGAAACAGC-AGCCTTCGGTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTT 1770995 Query 33971 TTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 || || || |||| ||||| | || || |||| Sbjct 1770994 CTCCTTGGTGATGCCATGGCTGGCGACTAAGAAGGCCA 1770957 >seq9940 Length=104459 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 69212 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 69153 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| |||||||| || ||||| ||||| || || | | |||| Sbjct 69152 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 69093 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 69092 CTGTTTCTTATACCATA 69076 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || |||||||| || | || || || || | ||| || || || || || || ||| Sbjct 55199 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 55140 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||||||||||||||| | |||||| | || || || || || ||||| ||||| Sbjct 55139 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 55080 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | |||||||| || || || | ||||| || ||||| || ||||| | ||| | Sbjct 55079 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACGT 55020 Query 62808 TTATTAGA 62815 ||||| || Sbjct 55019 TTATTTGA 55012 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 49823 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 49764 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 49763 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 49704 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || |||| ||| || || | ||||||| || Sbjct 49703 AGGCTCCAGGTAAATAGCAAATGCTCCAGGTCG 49671 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| |||||||| ||||| | || || | || || || || || |||| Sbjct 20955 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 20896 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 20895 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 20836 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 20835 GTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCAT 20790 >seq13804 Length=3110032 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| || | |||||||| | ||||||||||||| ||| Sbjct 2169482 GTTACTTTCTATGATGTGTATATTATTCTCCAAGCTTTTGTACTGACTACTGCAGTATTT 2169423 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | |||||| || |||||||||||| |||| ||||||||| ||| ||| | |||| Sbjct 2169422 CTTGGTTTGACTATATATACTCTACAATCTAAGAAAGATTTCAGCAAATTTGGAGCAGG 2169364 >seq10479 Length=2664821 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | |||||| || |||||||| || ||||| ||||| ||||| | Sbjct 1179479 CCTCATCTCTGCTAATAAGTTCGTTGGAGAACGTGAGGCCAGGCATCAGGCCTCGCTTCT 1179420 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || ||||| || ||||| ||||||||||| || ||||| || || | Sbjct 1179419 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 1179360 Query 33724 C 33724 | Sbjct 1179359 C 1179359 >seq7184 Length=5150663 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 2936603 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 2936544 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 | ||| ||||| | ||| ||||| || || ||||| ||||||||||| ||||||||||| Sbjct 2936543 AACCAGAATATAGCAGCAAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2936485 >seq2520 Length=8653699 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 31338 ATCTAGAGATTGTACTTCTTCAAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAG 31396 ||||| | ||| ||||| || | |||||||| || | || |||| | | || ||||| | Sbjct 1838275 ATCTAAAACTTGAACTTCCTCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTG 1838216 Query 31397 CTATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTC 31456 | |||| || ||| | ||||| | ||| | |||| ||| ||||| || | || | Sbjct 1838215 CAATTCGGTCACCATT-TTTACTTCAAAATTTTATTTGCCAAAATTAAATAGTACAACAC 1838157 Query 31457 CTATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 31505 | | ||||| ||||||||||| ||||| ||||| |||||| ||| || Sbjct 1838156 CAAGATTTCCTCTATAATCTTCATCTATAACACCAGCTCCTACATCTAT 1838108 >seq6429 Length=1074037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||| |||| |||||||||||||||||| ||||| ||||| ||||||||||| |||| Sbjct 132683 GCTCCTACATCAAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGCGTACACA 132624 Query 188233 TACGAATGG 188241 | || |||| Sbjct 132623 TCCGCATGG 132615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629016401158320