Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7184 123 2e-23 seq9940 102 8e-17 >seq7184 Length=5150663 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||||| |||| ||| | Sbjct 2936605 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCT 2936546 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||||||||||||||| || || ||||| ||||| || ||||| ||||| | Sbjct 2936545 TTAACCAGAATATAGCAGCAAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 2936486 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 2936485 CCACCACCCTTTCCCC 2936470 >seq9940 Length=104459 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 69212 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 69153 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 69152 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 69093 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 69092 CTGTTTCTTATACCAT 69077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| |||| | || | | |||| || Sbjct 71500 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCCGCAATATGGATGT 71441 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | ||| || Sbjct 71440 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATGTTGAGAATGGTTT 71381 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATA 37010 | ||||| || ||||| |||||||| || Sbjct 71380 TCTGAGAGATTTCCCATACCGTTTTGTA 71353 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| | || || | | || Sbjct 25730 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 25671 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | |||||||||||| | | Sbjct 25670 TATGTTTCAATAGCAGCATCGATATCTTCTTCGTGAATTCCCACAGATACCCTCATCAAC 25611 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 25610 ATATGTTGTGGTCTTTC 25594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467928783745360