Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13804 172 7e-38 seq9940 131 2e-25 seq7184 102 1e-16 seq6429 86.0 8e-12 seq6294 86.0 8e-12 >seq13804 Length=3110032 Score = 172 bits (190), Expect = 7e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 9233 CTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTA 9292 ||| |||| | |||||||||| | |||| |||||||| |||||||||||||||||||| Sbjct 2166447 CTTTTTAGCTGCTTCCAAAAGTCGCAACAAGTGCAAGAATAGATTGATGATATCCAAGTA 2166506 Query 9293 GAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGT 9352 || |||||| | ||||| ||||| || ||||| || ||| | || || ||||| || || Sbjct 2166507 GAGATTGATGGCAGCTAATACATACTCCTCAGGTGATAGCCTGTGCATCAGTGAATGTGT 2166566 Query 9353 GTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCAC 9412 ||||||||| |||||||| ||||| | ||| || || | ||||| || |||| ||| || Sbjct 2166567 GTCATAGATGATGAATCCACAGAAAAGAAGCGCGCCTACAGCAGCCACAACCAACTCTAC 2166626 Query 9413 TGTTTCACTTTGCACAAATA 9432 ||| ||||| | | ||||| Sbjct 2166627 TGTCTCACTATAAAAAAATA 2166646 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||| |||| ||||||||||||||| ||||| | ||||| Sbjct 2169364 CCTGCTCCAAATTTGCTGAAATCTTTCTTAGATTGTAGAGTATATATAGTCAAACCAAGA 2169423 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| | |||||||| | || | || |||||||||||||||||| Sbjct 2169424 AATACTGCAGTAGTCAGTACAAAAGCTTGGAGAATAATATACACATCATAGAAAGTAAC 2169482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803 |||| || | |||| || | || ||||||||||| | ||||| ||| | || ||||| Sbjct 2175541 TGTACAAATGTCCGTATAGACTCGAAGTATAAAAAAAATGCAGATGTCACTGTAGTTAAG 2175600 Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||| ||| ||||||| |||||||||||||||||| || Sbjct 2175601 AGAACTTGCAGAGAAAGGATGGTGTAGACTTTTCTTAGAAAGGC 2175644 >seq9940 Length=104459 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 69212 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 69153 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| |||||||| || ||||| ||||| || || | | |||| Sbjct 69152 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 69093 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 69092 CTGTTTCTTATACCATA 69076 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| |||||||||||||| | || || || || || || || || | || Sbjct 20955 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 20896 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 20895 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 20836 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 20835 GTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCAT 20790 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 49823 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 49764 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 49763 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 49704 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || |||| ||| || || | ||||||| || Sbjct 49703 AGGCTCCAGGTAAATAGCAAATGCTCCAGGTCG 49671 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 55199 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 55140 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 55139 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 55080 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | |||||||| || ||||| | ||||| || ||||| || ||||| | ||| | Sbjct 55079 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACGT 55020 Query 65601 TTATTAGA 65608 ||||| || Sbjct 55019 TTATTTGA 55012 >seq7184 Length=5150663 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 2936603 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 2936544 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 | ||| ||||| | |||||||| || || ||||||||||||||||| || |||||||| Sbjct 2936543 AACCAGAATATAGCAGCAAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2936485 >seq6429 Length=1074037 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || ||||| || |||||||| ||||| |||||||||||||||||||||||| || Sbjct 132615 CCATGCGGATGTGTACGCTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTTGA 132674 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 || |||||| | |||| || Sbjct 132675 TGTAGGAGCGGGGGTAGTGG 132694 >seq6294 Length=2305215 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| | ||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 1600075 CCATGCAAATGTGTACACTGGCAGAGGCCACACAGCTGCCATAGTTGAAGTCTTCCTCGA 1600134 Query 9907 TGGAGGA 9913 ||||||| Sbjct 1600135 TGGAGGA 1600141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657335530153960