Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq18467 214 2e-50 seq8166 143 2e-29 >seq18467 Length=3096793 Score = 214 bits (236), Expect = 2e-50 Identities = 428/636 (67%), Gaps = 20/636 (3%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||||||| || ||| | ||| || || ||||| ||||||| ||||| || Sbjct 1468667 CAGCGGCTCAACGTGATTCAAGTAGATGTGTGCATCTCCCAAAGTGTGCAGGAAGTCACC 1468726 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| |||| ||| |||| || || || || |||| ||||||||||||||| Sbjct 1468727 TGGCTTCAGGCCGGTGATGTGTGCGACCATGTAGGTGAGCAGGGTGTAGCTGGCGATGTT 1468786 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || || |||||||| || |||||||||||||||||||||||||| || || Sbjct 1468787 GAAGGGCACACCTAGCCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGGTCACC 1468846 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| |||||||| | | || || ||||| || ||||| | || || Sbjct 1468847 GTTCACCACGTAGAACTGACAGAGGGCATGGCATGGAGGCAGGGCCATTGAAGGAAGATC 1468906 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 || ||||| || |||| | ||| | | |||| || | || ||| | Sbjct 1468907 GTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGCC 1468966 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 | ||| | |||| |||| | || ||| | || | | || | |||| Sbjct 1468967 AATCACCTTTTGCAGTCGGTCTGCTCCTTGATCGGAATAATCTGAATCCATATCTTTGTA 1469026 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCG 21343 || ||||||||||| |||||||| || || || || || || | ||| | | || Sbjct 1469027 GTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACGGGGCCTAAATCTTCTTTTATGCT 1469086 Query 21344 GTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTAC 21403 | ||| ||| |||| | || | |||||||| ||| |||| Sbjct 1469087 G---GAGAATCCC-------------AGGC----TATCCATTGGCGTCCCAGATTCTTAC 1469126 Query 21404 GCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTC 21463 || | ||||||||| | | | ||||| ||| |||||||||||||||||| | | Sbjct 1469127 TCCCTTGGACGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAACTGCCC 1469186 Query 21464 CACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTT 21523 || ||| ||| |||| ||||| ||||| || | |||||||||||| | || ||| | Sbjct 1469187 CAGGACACCCTTCCAGAACACATGCTTGGTTGTCAGCAGAGGAAACTCATGTCTCAGGCT 1469246 Query 21524 ATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCC 21559 || || ||||| | |||||||| ||| |||||| Sbjct 1469247 GTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCC 1469282 >seq8166 Length=12950751 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 4309623 TCAGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 4309682 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || || |||||||| || ||||||||||||||||||||||||||||| || Sbjct 4309683 GCACACCTAGCCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 4309742 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | || || || || || |||||| Sbjct 4309743 CCACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAGGGCCATC 4309786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427245425283120