Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18010 143 4e-29 seq9940 122 1e-22 seq10479 120 4e-22 seq7184 104 3e-17 seq2520 87.8 3e-12 >seq18010 Length=2831715 Score = 143 bits (158), Expect = 4e-29 Identities = 262/380 (69%), Gaps = 19/380 (5%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||||| || || || || ||||||| |||||| ||||| | | | |||| |||||| Sbjct 1771383 AACATCAGGCAGGCAAAGTCTCAGTGCAAACCCTCTTCTCTGCCACTCAGTTGGTTGGAG 1771324 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || |||| || | || ||| | | || || ||||| ||||| | |||||| Sbjct 1771323 AA--TGAGGCCAGTCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGCAAA------- 1771273 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC-- 50128 ||||||||||||| ||||| ||| | |||| | |||||||| ||| Sbjct 1771272 ----AGAAGATTCCTTCCACTGCCTTAAACCCTACAACACGTTCTCCATAGGCGGCCTCT 1771217 Query 50129 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA-CACAAGGCATCGTTTC 50186 |||| ||||| ||||| | | || | || || ||||||||||||| || Sbjct 1771216 TTGTCCCTGATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTC 1771157 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 | ||| || ||||| | | |||| | |||||||| | ||| || || | || Sbjct 1771156 CACGGCGTTGAAGAGCAACTCCCTTTCCTGGGCATCTTTAATGTCAGTGTCAATGAGGAG 1771097 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 ||| |||||||| ||||| |||||||| ||||| || || || | ||||||||| | ||| Sbjct 1771096 ACTGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGC-AGC 1771038 Query 50307 C-TCGGTAATCTGCACTTCT 50325 | ||||| ||||| |||||| Sbjct 1771037 CTTCGGTGATCTGAACTTCT 1771018 >seq9940 Length=104459 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 69212 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 69153 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| |||||||| || || || ||||| || || | | |||| Sbjct 69152 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 69093 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 69092 CTGTTTCTTATACCATA 69076 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| |||||||| || || | || | ||| | ||||| || || || || ||||| || Sbjct 55200 GTAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATA 55141 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 |||||||||||| || || | |||||| | || || ||| | || ||||| ||||| Sbjct 55140 ATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATA 55081 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | |||||||| || ||||| | ||||| || ||||| || ||||| | ||| | Sbjct 55080 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACG 55021 Query 79479 CTTATTAGA 79487 ||||| || Sbjct 55020 TTTATTTGA 55012 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 49819 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 49760 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 49759 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 49700 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCG 80087 |||| ||| || || | |||| ||||| Sbjct 49699 TCCAGGTAAATAGCAAATGCTCCAGGTCG 49671 >seq10479 Length=2664821 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||| | Sbjct 1179479 CCTCATCTCTGCTAATAAGTTCGTTGGAGAACGTGAGGCCAGGCATCAGGCCTCGCTTCT 1179420 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || ||||| || || || || ||||||||||| || |||||||| || | Sbjct 1179419 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 1179360 Query 50102 CAAC 50105 | || Sbjct 1179359 CCAC 1179356 >seq7184 Length=5150663 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 2936603 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 2936544 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 | ||| ||||| | |||||||| || || ||||| ||||||||||| || |||||||| Sbjct 2936543 AACCAGAATATAGCAGCAAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 2936484 Query 50104 AC 50105 || Sbjct 2936483 AC 2936482 >seq2520 Length=8653699 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 47710 GATCCAAA--CCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTCCAGTT 47767 || ||||| ||| ||||| ||| | ||| ||||| | ||| |||||||| | || Sbjct 1838307 GAACCAAAACCCCCTGAGCCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCCTCTATTT 1838250 Query 47768 CTGGAT-AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACATTG 47826 |||||| || | || |||| | | || ||||| || |||| || || | ||||| | Sbjct 1838249 CTGGATTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCATT-TTTACTTCA 1838191 Query 47827 AACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCGTCT 47886 || | |||| ||| ||||| || | || || | ||||| ||||||||||| ||| Sbjct 1838190 AAATTTTATTTGCCAAAATTAAATAGTACAACACCAAGATTTCCTCTATAATCTTCATCT 1838131 Query 47887 ATTACACCACCTCCTATATCAAT 47909 || |||||| |||||| ||| || Sbjct 1838130 ATAACACCAGCTCCTACATCTAT 1838108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717355081281160