Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18010 136 5e-27 seq9940 132 6e-26 seq10479 114 2e-20 seq7184 107 3e-18 seq2520 84.2 3e-11 >seq18010 Length=2831715 Score = 136 bits (150), Expect = 5e-27 Identities = 258/379 (68%), Gaps = 17/379 (4%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||||| || || || || ||||||| |||||| ||||| | | | | || |||||| Sbjct 1771383 AACATCAGGCAGGCAAAGTCTCAGTGCAAACCCTCTTCTCTGCCACTCAGTTGGTTGGAG 1771324 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || |||| || | || ||| | | || || ||||| ||||| | |||||| Sbjct 1771323 AA--TGAGGCCAGTCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGCAAA------- 1771273 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-- 42233 ||||||||||||| |||||| ||| | | || | |||||||| |||| Sbjct 1771272 ----AGAAGATTCCTTCCACTGCCTTAAACCCTACAACACGTTCTCCATAGGCGGCCTCT 1771217 Query 42234 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA-CACAAGGCATCGTTTC 42291 |||| ||||| ||||| | | || | || || ||||||||||||| || Sbjct 1771216 TTGTCCCTGATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTC 1771157 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 | ||| || ||||| | | |||| | |||||||| | || || || | || Sbjct 1771156 CACGGCGTTGAAGAGCAACTCCCTTTCCTGGGCATCTTTAATGTCAGTGTCAATGAGGAG 1771097 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 ||| |||||||| ||||| |||||||| ||||| || || || | ||||||||| | | | Sbjct 1771096 ACTGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCAGCC 1771037 Query 42412 CTCGGTAACCTGTACTTCT 42430 ||||| | ||| |||||| Sbjct 1771036 TTCGGTGATCTGAACTTCT 1771018 >seq9940 Length=104459 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| |||||||||||||| || || |||||||| ||||| | Sbjct 69212 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 69153 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| |||||||| || ||||| ||||| || || | | || | Sbjct 69152 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 69093 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 69092 CTGTTTCTTATACCAT 69077 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| |||||||| ||||| | || || || || || || || || |||| Sbjct 20955 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 20896 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 20895 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 20836 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 20835 GTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCAT 20790 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || ||||| || | | | ||| || ||||| || || || || ||||||||| Sbjct 55199 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 55140 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || || | |||||| | || || || || || ||||| ||||| Sbjct 55139 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 55080 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | |||||||| || ||||| | ||||| || ||||| || ||||| | || | Sbjct 55079 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACGT 55020 Query 71563 TTATTAGA 71570 ||||| || Sbjct 55019 TTATTTGA 55012 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 49819 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 49760 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 49759 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 49700 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 49699 TCCAGGTAAATAGC 49686 >seq10479 Length=2664821 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||||||||| |||||||| || ||||| ||||| ||||| | Sbjct 1179479 CCTCATCTCTGCTAATAAGTTCGTTGGAGAACGTGAGGCCAGGCATCAGGCCTCGCTTCT 1179420 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || ||||| || || || || ||||||||||| || ||||| || || | Sbjct 1179419 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 1179360 Query 42207 C 42207 | Sbjct 1179359 C 1179359 >seq7184 Length=5150663 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 2936603 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 2936544 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 | ||| ||||||| |||||||| || || ||||| ||||||||||| || |||||||| Sbjct 2936543 AACCAGAATATAGCAGCAAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 2936485 >seq2520 Length=8653699 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 39837 ATCTAGAGATTGTACTTCTTCCAGTTCTGGAT-AATATATACGTTGATAGATTAGCTGAG 39895 ||||| | ||| ||||| || | |||||||| || | || |||| | | || ||||| | Sbjct 1838275 ATCTAAAACTTGAACTTCCTCTATTTCTGGATTAAAAAATCCGTTCACAAATGAGCTGTG 1838216 Query 39896 CTATTCTATCTCCCGTATTTACATTGAAAGTACATTTTCCATTATTAATAAGAATGACTC 39955 | |||| || || | ||||| | ||| | |||| ||| ||||| || | || | Sbjct 1838215 CAATTCGGTCACCATT-TTTACTTCAAAATTTTATTTGCCAAAATTAAATAGTACAACAC 1838157 Query 39956 CTATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAATA 40005 | | ||||| ||||||||||| ||||| ||||| |||||| ||| ||| Sbjct 1838156 CAAGATTTCCTCTATAATCTTCATCTATAACACCAGCTCCTACATCTATA 1838107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670285435434440