Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10317 96.9 3e-15 seq3796 93.3 3e-14 seq5424 87.8 1e-12 >seq10317 Length=1945714 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 15147 ATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG 15206 |||| || || | |||||| ||||| || ||||| |||||||| || | | | ||| Sbjct 477356 ATCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACTCC 477415 Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 | ||||| | ||| |||||||| | |||| | ||| || || ||||||||||| | Sbjct 477416 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 477475 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT--AAGGT 15324 || || ||| ||||||| ||||||| ||||| ||| | | || | || Sbjct 477476 AATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAGACCTTGAGAGT 477535 Query 15325 AATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || || || || ||||| |||||||| ||||| || Sbjct 477536 GATGGTCTTCCCCGTGAGGGTTTTCACAAAAATCTGCATCTT 477577 >seq3796 Length=456941 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | ||||| ||||| |||||||| |||||||| || |||| || | Sbjct 356753 TCTCAACACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAA--AGAACG-TC-C 356698 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | ||| |||||||| | |||| | ||| || | ||||||||||| | Sbjct 356697 GTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGACCAGGAGGAATTCCTTCCTC 356638 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || | | ||| || ||||| ||||| | ||| | ||| || || || ||||| Sbjct 356637 ATCCTAGTTCTTGGTC-TTACATTTTCTGTTGTAGCCAAGGGTTCAACCTCGAAAGTAAT 356579 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| ||||| || || |||| |||||||| |||||||| Sbjct 356578 GGTCTTACCCGTTAGGATTTTCACAAAAATCTGCATATT 356540 >seq5424 Length=3103736 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | ||| || |||| || ||||| |||||||| || Sbjct 2558601 CCACCACGAAGTCTCAACACAAGATGGAG--TGGACTCCTTTTGAATGTTGTAGTCAGAA 2558658 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGC-GTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | || ||||| | ||| |||||||| ||| ||| | ||| || || || Sbjct 2558659 AGAGTACTTCTGTCTTACAGTTGCTTGCCAGCAGTAGGTCAGTCTTTGCTGATCAGGAGG 2558718 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||| || ||| ||| ||||||||||||||| ||||| | | | Sbjct 2558719 AATTCCTTCTTTATCCTGAATCTTGGCCTTTACAATTTCTATTGTATC-CGAGGGT---- 2558773 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || || || ||||| ||||||| ||||| || Sbjct 2558774 -TCAACCGTGATGGTCTTCCCCGTAAGGGTTTTCTCAAAAATCTGCATTTT 2558823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361729985629629