Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq3078 129 6e-25 >seq3078 Length=2150095 Score = 129 bits (142), Expect = 6e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||||||||||||||||| || || | Sbjct 335501 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAAGAGGTGA 335560 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || | |||| |||| || ||| |||| ||||||||| ||||| |||| Sbjct 335561 TGCCCCAGGCCGAGACCCAGGGCCCCGACATCAAGGAGCCCGTGAACTCGCTGGGGGAGA 335620 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 335621 AGCTGAAGACGCTGAGGCT 335639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| ||||| | ||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 337680 AGCTCCAGGAGAGAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 337739 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 |||| || |||||||| ||||| || Sbjct 337740 TAGAGGCCTACATGACAATGAAGAT 337764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546682872077440