Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7184 125 8e-24 seq9940 102 9e-17 seq18010 98.7 1e-15 >seq7184 Length=5150663 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | ||||||||||| |||||||| ||| Sbjct 2936603 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 2936544 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||||||||||| ||||||||| || || ||||| || |||||||| || ||||| || Sbjct 2936543 AACCAGAATATAGCAGCAAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 2936484 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 2936483 ACCACCCTTTCCCC 2936470 >seq9940 Length=104459 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | |||||||| | || || || || ||||| ||||| || || Sbjct 69209 TGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 69150 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| |||||||| || || |||||||| | |||| | ||| || Sbjct 69149 TCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 69090 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 69089 TTTCTTATACCATA 69076 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| || | || || | |||||| || | Sbjct 71500 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCCGCAATATGGATGT 71441 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| || |||||||| | | ||| Sbjct 71440 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATGTTGAGAATGGTTT 71381 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| ||||| |||| || |||| ||| || || Sbjct 71380 TCTGAGAGATTTCCCATACCGTTTTGTAAAGCTGCTTAAGGTCATCAGG 71332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| |||| || | | || Sbjct 25730 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 25671 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 25670 TATGTTTCAATAGCAGCATCGATATCTTCTTCGTGAATTCCCACAGATACCCTCATCAAC 25611 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 25610 ATATGTTGTGGTCTTTCA 25593 >seq18010 Length=2831715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 409/645 (63%), Gaps = 14/645 (2%) Strand=Plus/Minus Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAAT 18744 ||||| ||| |||||| || || || | ||| ||| ||| ||||| || |||||| Sbjct 1771650 ACTCTCCTTTTAAAGAAGTTCGTCTTCCTTTCTCGTGAAATATTATCCATGAAGTCAAAT 1771591 Query 18745 GGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACA 18804 ||| ||| ||| | | || | || || | || | ||||| || | || Sbjct 1771590 GGACTTTCTACTCGGAAAACCTTGCTAAAACCCAGCTCCAGCCTGAGTCTGTCAGTCACG 1771531 Query 18805 AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCA 18864 |||| ||| || ||||||| | |||||||| || || || || || || | || Sbjct 1771530 AATTCAATGTAACCCTTCATCAGAGTGCAATTCATCCCAATGAAATTCACTGGCAAGGCC 1771471 Query 18865 TCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCT 18924 ||||| || || || || ||||| || |||| | || || | | || | Sbjct 1771470 TCTGTGAGGAACTCCTGCTCTATCCCAACAGCCTTGGTGATGATCTCTTTCGCCCTCTAC 1771411 Query 18925 TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCC 18984 || ||| || || || || | ||||||| || ||||| || || || | ||| Sbjct 1771410 TCTGCAGGTTTGTGCAGCAGGTGACTGAACATCAGGCAGGCAAAGTCTCAGTGCAAACCC 1771351 Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| | ||| || || || |||| | |||| || ||| ||| ||| || Sbjct 1771350 TCTTCTCTGCCACTCAGTTGGTTGGAGAATG--AGGCCAGTCACCAGGTCTCATTTCTTG 1771293 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | ||||| |||| || ||||| ||||| ||| | Sbjct 1771292 AGCCAGAATATCGGCGCAAA-----------AGAAGATTCCTTCCACTGCCTTAAACCCT 1771244 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 || | | ||||||||| || || || | ||||| || ||||| ||| | Sbjct 1771243 ACAACACGTTCTCCATAGGCGGCCTCTTTGTCCCTGATCCAACGCAAGGCCCAGCCAGGC 1771184 Query 19165 TTCTTTTTTA-CACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT 19223 | | || || |||| ||||| ||||| | | || || || || | || | | Sbjct 1771183 TGCCTTCTTGGCACAAGGCATCGTCTCCACGGCGTTGAAGAGCAACTCCCTTTCCTGGGC 1771124 Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| | | || || | | |||||||||||| ||||| || ||||| || || Sbjct 1771123 ATCTTTAATGTCAGTGTCAATGAGGAGACTGTACATTTCAGAATGGATGTTTTCCATGGC 1771064 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || || || | ||| ||||| | |||| || ||||| ||||| Sbjct 1771063 AATTTGGAAGCTGTAGAAACAGCAGCCTTCGGTGATCTGAACTTC 1771019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561393734369160