Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq18467 266 3e-66 seq8166 138 9e-28 seq18455 87.8 1e-12 >seq18467 Length=3096793 Score = 266 bits (294), Expect = 3e-66 Identities = 438/626 (70%), Gaps = 27/626 (4%) Strand=Plus/Plus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| | | || || | | ||||| | |||||||| || ||||||| || ||| Sbjct 1468632 GGGAAAGGCT-TCGGTTCTCGTTGAAGCTGCATTTTCAGCGGCTCAACGTGATTCAAGTA 1468690 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 || ||| || ||||||| ||||| | || || || || | || ||||||| ||| || Sbjct 1468691 GATGTGTGCATCTCCCAAAGTGTGCAGGAAGTCACCTGGCTTCAGGCCGGTGATGTGTGC 1468750 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | |||||| ||||| || | ||||||||||||||| ||||| || || ||||||||||| Sbjct 1468751 GACCATGTAGGTGAGCAGGGTGTAGCTGGCGATGTTGAAGGGCACACCTAGCCCCATGTC 1468810 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 | ||||||||||| ||||| || || || || |||| |||||| |||||||| | Sbjct 1468811 TGCTGACCTCTGGTACAGCTGGCAGGACAGGTCACCGTTCACCACGTAGAACTGACAGAG 1468870 Query 30006 GGTGTGGCACGGAGGAAGAGCCA-TGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063 || ||||| ||||| || |||| ||| | ||| || || || ||||| || |||| | Sbjct 1468871 GGCATGGCATGGAGGCAGGGCCATTGAAG--GAAGATCGTTTGGATTCCAAGCACACAGG 1468928 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123 ||||| | ||||| || |||||| | |||| | | | | |||||||| | || Sbjct 1468929 ATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGCCAATCACCTTTTGCAGTCGGTCT 1468988 Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 | || | || || |||| ||| || |||| ||||| || |||||||||||| Sbjct 1468989 GCTCCTTGATCGGAATAATCTGAATCCATATCTTTGTAGTCTGCCCCAAAATGCCTCCAC 1469048 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-AGCCCCTCTTGTC 30242 || || || || || || || | ||| |||| | |||| || | ||| Sbjct 1469049 TGAAAGCCATAAACGGGGCCTAAATCT---TCTT--TTATGCTGGAGAATCCC------- 1469096 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 || || | || |||||||||||||| |||| ||||| || || ||||| Sbjct 1469097 -----AGGCT----ATCCATTGGCGTCCCAGATTCTTACTCCCTTGGACGACAGTTCTTT 1469147 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 | |||||||| || ||| |||||||||| || | ||| ||| ||||||| || || Sbjct 1469148 AGCATTTGTGGATCCCTTGATAAACCACAGCAACTGCCCCAGGACACCCTTCCAGAACAC 1469207 Query 30363 CCTCTTGGTCGTGAGGAGGGGAAACT 30388 |||||| || || || ||||||| Sbjct 1469208 ATGCTTGGTTGTCAGCAGAGGAAACT 1469233 >seq8166 Length=12950751 Score = 138 bits (152), Expect = 9e-28 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 4309625 AGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 4309684 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || ||||||||||| | ||||||||||| ||||| || || ||||| |||| | Sbjct 4309685 ACACCTAGCCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 4309744 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| ||||| || | || ||||| || || || ||||| Sbjct 4309745 ACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAGGGCCAT 4309785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || |||||||||||||| || || || || || || | || Sbjct 4311844 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACGGGGCCTAAATC 4311903 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| |||| ||| ||| ||| |||||| ||||| | ||| || |||||||| Sbjct 4311904 TCCTTCTTTTCTGCTGGAGAATCCCAGGCTGTCCAGGAAGTCACGGGACCCATTGGCGTC 4311963 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| | || ||||| || || ||||| | || ||||| || Sbjct 4311964 CCAGATTCTCACTCCCTTGGACGACAGTTCTTTAGCATTGGTGGATCC 4312011 >seq18455 Length=17742090 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || |||||||| | | ||| | |||||| | ||| Sbjct 6154911 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGATTCTTCTTGGGA 6154970 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 6154971 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 6155018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408110787632237