Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1135 248 7e-61 seq18467 147 2e-30 seq14731 132 4e-26 seq4541 118 9e-22 seq8166 100 2e-16 >seq1135 Length=2402129 Score = 248 bits (274), Expect = 7e-61 Identities = 212/262 (81%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 1269 GAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAA 1328 ||||| || || ||||| || ||||| |||||||| ||| | || || |||||||||||| Sbjct 126398 GAAACTCCCCAGGAAGTCGTGATTGTGACATGGCAGAAAATGAAGGCTTCAAGCCCAGAA 126457 Query 1329 AACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAA 1388 ||||||| |||||| || || || || ||||| || || || || || || || ||||| Sbjct 126458 AACATGGTCACTTTCAGCAAGGAGCATGGGGTCGTGGTCCAACCCGCCTATAAGGATAAG 126517 Query 1389 ATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTG 1448 ||||||||||||||| | ||||| || |||||||| || ||||||||||| || || || Sbjct 126518 ATGAACATAACTGAGTTGGGACTTCAGAACACAACCATCACCTTCTGGAATACCACTCTG 126577 Query 1449 GATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 |||||||||||||| ||||||||| | || || || || || || ||||||||||||||| Sbjct 126578 GATGATGAAGGGTGTTACAAGTGTCTCTTCAATACCTTCGGTTCCGGGAAGATGTCAGGA 126637 Query 1509 ATAGGGTGTCTAACCCTTTTTG 1530 |||| || || ||||| |||| Sbjct 126638 ATAGCCTGCCTCACCCTCTTTG 126659 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1553 CTATGAGTTATCTGAAGGAAGCTTAAATGTTACGTGCTCTGCAAATGCCCGCCCAGTACC 1612 |||| | |||||||||| | ||||||| || |||||||| ||||||||||||| || Sbjct 128934 CTATAAATTATCTGAAGACCACCTAAATGTCACTTGCTCTGCCAATGCCCGCCCAGCTCC 128993 Query 1613 AACAATGGTATGGAATTTTAATGATACAGACAGCTACAATAATACTGAAATTATAACCCA 1672 |||| ||||| | || ||| | |||| | |||||| ||||| || || Sbjct 128994 TGCAATCTCCTGGAAGGTCGCTGGGTCAGGAATGGACAACAGTACTGAGATTATCACACA 129053 Query 1673 CCCCAATGGAACAACATCTATTGTCAGTGTTCTCTACATCAGAGATCCAAAAAAT 1727 ||| ||||| || || ||| | |||| | ||| |||||| ||| || || ||| Sbjct 129054 CCCAAATGGGACCACGTCTGTCATCAGCATCCTCCACATCAAAGACCCCAAGAAT 129108 >seq18467 Length=3096793 Score = 147 bits (162), Expect = 2e-30 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||| ||||||| |||||||| |||| || ||||| || | || || Sbjct 1468656 AGCTGCATTTTCAGCGGCTCAACGTGATTCAAGTAGATGTGTGCATCTCCCAAAGTGTGC 1468715 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | ||| ||||| || | || || || | ||| || | |||||| || | || ||||| Sbjct 1468716 AGGAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGACCATGTAGGTGAGCAGGGTGTAG 1468775 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || ||||| || |||||||||||||| |||||||||| ||||| Sbjct 1468776 CTGGCGATGTTGAAGGGCACACCTAGCCCCATGTCTGCTGACCTCTGGTACAGCTGGCAG 1468835 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || || ||||| | || || ||||||| | | || ||||||||||| |||| Sbjct 1468836 GACAGGTCACCGTTCACCACGTAGAACTGACAGAGGGCATGGCATGGAGGCAGGGCCATT 1468895 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGC 118721 ||| || | | |||||||| || Sbjct 1468896 GAAGGAAGATCGTTTGGATTCCAAGC 1468921 >seq14731 Length=214786 Score = 132 bits (146), Expect = 4e-26 Identities = 361/548 (66%), Gaps = 50/548 (9%) Strand=Plus/Minus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||||||| | || || ||| | ||||| ||| | || || | | Sbjct 15221 GCTGTGTCCCAGAACATGGGCATCAGCAAGAATGGAGACCTGCCTTGGTCCCCACTCAGA 15162 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || |||| |||| |||||| | | ||||| | || ||||||||| Sbjct 15161 AATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCTTCAGCAGAAGGTAAACAGAAT 15102 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGA 2329 | ||| || ||||| ||||| || |||| | | ||| | ||||||| | Sbjct 15101 TT---------GGGTAGGAAGACCTGGTTCTCCATTCC--TGAGAAGTATTGGCCTTTAA 15053 Query 2330 ACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 | |||| || ||| | | |||||||||| |||| | || | ||||| | Sbjct 15052 AGGACAGGATTAATTTAGATCTCAGTAGA-ACCTCTGAAAG----------GAGCTCATT 15004 Query 2390 TTGTT-GCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448 || || || |||||| ||| | || | || |||| | ||||||||||| | | Sbjct 15003 TTTTTTGCCAAAAGTCAGGATGATGCCTTAAAACTTATTGAGGAACCAGAATTAACAAAT 14944 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCAT-TACAAG 2507 | ||||| | | ||||||| | || ||||| | ||| ||| |||| ||| ||||| Sbjct 14943 AAAGTGGACATGGCTTGGATAGTGGGAGGAAGTTTTGTTTATAAGGAAGCCATGAACAAG 14884 Query 2508 ATCTTGCAA--ACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACA 2565 | | || | | |||| | ||||| | |||||| |||| |||||| Sbjct 14883 CT-TGGCCATTATAGAT--TCTTTTTGATAAGGATCATGCA------------GGATACA 14839 Query 2566 ----TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGT 2621 | || ||||||||| || | |||||||||| || | || ||||||||||| Sbjct 14838 TTTTTTTTTTCCAGAAATTGATTTGGAGAAATACAAACTTCTCCCAGAGTTTCCAGGTGT 14779 Query 2622 TCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || |||| || || || ||||| || |||| ||||||| ||| ||| |||||| || Sbjct 14778 TCTTTCTGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATATGAAGTATGTGAAAAGAA 14719 Query 2682 aaCATAAT 2689 ||||| Sbjct 14718 TGAATAAT 14711 >seq4541 Length=5082967 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || |||||||| | ||||| || ||||||||| Sbjct 2712119 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGAAGGATTGTGGCCTTCTTTGAG 2712060 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 2712059 TTCGGTGGAGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 2712000 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||||||| Sbjct 2711999 ATCGCCCTGTGGATGACAGA 2711980 >seq8166 Length=12950751 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 4309625 AGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 4309684 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || |||||||||||||| |||||||||| ||||| || ||||| ||||| | Sbjct 4309685 ACACCTAGCCCCATGTCTGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 4309744 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAA 118698 || || ||||| | | | || ||||| ||||| |||| ||| Sbjct 4309745 ACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAGGGCCATCGAA 4309789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413962720409716