Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq166 89.7 4e-13 seq29 86.0 5e-12 seq374 82.4 6e-11 >seq166 Length=2973255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||||||||| Sbjct 2554432 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAATTGGAA 2554491 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || | ||| || | || ||||| ||||||||||| || |||||||| | ||||| Sbjct 2554492 GACGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 2554550 >seq29 Length=10643064 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | ||||| | ||||| || ||||| || ||| |||||| Sbjct 9522603 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAGACCATCACTCTCGAGGTTGAACCC 9522544 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 9522543 TCGGATACGATAGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 9522484 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| ||||||| ||| || | || ||| Sbjct 9522483 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGGCGCACTTTGTCTGACTAC 9522424 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| || || ||||| | ||||| Sbjct 9522423 AACATTCAAAAGGAGTCCACGCTTCATCTTGTGTT 9522389 >seq374 Length=1022520 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||||| ||||| | ||||| || |||| || ||| |||||| Sbjct 479376 AAGATGCAGATTTTCATGAAAACCCTCACGGGGAAGACCACCACTCTCGAGGTTGAACCC 479317 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || ||||| || | ||||| ||||| | || ||| Sbjct 479316 TCGGATACGATAGAAAATGTCAAGGCTAAGACCCAGGATAAGGAAGGAATTCCTCCTGAT 479257 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| ||||||| ||| || | | ||| Sbjct 479256 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGGTGCACTTTGTCTTACTAC 479197 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| || || ||||| | ||||| Sbjct 479196 AACATTCAAAAGGAGTCCACGCTTCATCTTGTGTT 479162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410738453246756