Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq72 95.1 2e-14 >seq72 Length=5175400 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| || || || ||||| || || ||||| || || ||| Sbjct 2894282 TGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGACACAGTGTTTTTTATCCTAAGG 2894341 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || || ||||||||||| | ||| |||||||| | Sbjct 2894342 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 2894401 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| |||| || || || Sbjct 2894402 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 2894436 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||||| ||||| || || ||||| ||||||||| | || ||||| Sbjct 2895441 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATTCATGTGATTATGTACTCATACTATGGG 2895500 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||||| |||||| ||||||||||| || || || | Sbjct 2895501 CTAACTGCATTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCA 2895558 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 2895559 TGTTGCAGCTGGT 2895571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923062313306160