Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 8e-13 seq93 87.8 3e-12 seq166 84.2 3e-11 seq29 84.2 3e-11 >seq5 Length=22519077 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||| | ||||| || || | ||| | ||| || || ||| || || || ||||| || Sbjct 15114131 CCACTACGAAGTCGCAACACAAGATGGACAGTGGACTCCTTTTGA-ATGTTGTAATCAGA 15114073 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | || || || | ||| || ||||||| |||| |||||||||||| ||||| Sbjct 15114072 CAGAGTACATCTGTCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 15114013 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 15114012 AATTCCTTCCTTATCCTG 15113995 >seq93 Length=4592439 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || || |||| |||| |||||| | || || ||| ||| | |||| Sbjct 2489068 TTCCTTCTGGGTGCTATGGAAGAGGAGCTCCACGTTCCAGCTTGGCTGCAAAACACTTTA 2489009 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||| | || || |||||| Sbjct 2489008 TAGATGTAGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATCTTGGTGTTGTATTAT 2488949 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| ||||| | |||| | || || |||| | || | || | Sbjct 2488948 TTAATTTTGGCAAAGAAAATTTTGAAGTAAA-AATGGTGACCGAATTGCACAGCTCATTT 2488890 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| ||||| |||| Sbjct 2488889 GTGAACGGATTTTTTATCCAGAAAT 2488865 >seq166 Length=2973255 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 2554565 CCACCATGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 2554507 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || || ||||| || |||||||| |||| |||||||||||| ||||| Sbjct 2554506 CAAAGTATGTCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2554447 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 2554446 AATTCCTTCCTTATCCTG 2554429 >seq29 Length=10643064 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | || || || ||| || || || || || || Sbjct 9522374 CCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 9522432 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | || || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 9522433 CAAAGTGCGCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 9522492 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 9522493 AATTCCTTCCTTATCCTG 9522510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743418086791680