Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10 190 3e-43 seq139 125 9e-24 seq190 111 2e-19 seq410 105 8e-18 seq115 102 1e-16 seq28 89.7 6e-13 seq5245 86.0 8e-12 seq193 84.2 3e-11 seq75 84.2 3e-11 seq513 82.4 1e-10 seq30 82.4 1e-10 >seq10 Length=16450340 Score = 190 bits (210), Expect = 3e-43 Identities = 489/739 (66%), Gaps = 23/739 (3%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| ||| |||| | || ||||| ||||| | || || || || || || || | ||| Sbjct 11919839 CATCACTTCCATCCTCTGATATTCGCCCACTCTCTTCTCAAAGAAGTTCGTCTTCCTTTC 11919780 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATT--GTAAAtttttttAAAT 33395 ||| ||||| |||||||| ||||| ||| | | ||| | ||| || |||| Sbjct 11919779 TCGTGAAATATTCTCCATGAAGTCAAATGGACT--TTCTATTCGGAAAACCTTGCTAAAA 11919722 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||| || | | |||||| | |||||||| || || ||||||| ||| Sbjct 11919721 CCCAGCTCCAGCCTGAGTCTATCAGTCACGAATTCAATGTACCCCTTCATCAGAGTGCAA 11919662 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| | |||| || ||||| | ||| | || || || || || || || || Sbjct 11919661 TTCATCGCAATGACATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTATCCCAACA 11919602 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 || || || || || | | || | | || ||| || | | ||||| ||| Sbjct 11919601 GCGTTGGTGATGATCTCTTTCACCCTCTGCTCTGCAGGTTTGTGCAGCAGGTGTTTGAAC 11919542 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || || || || ||||||| |||||| ||||| ||| | | || ||| || || Sbjct 11919541 ATCAGGCAGGCAAAGTCTCAGTGCAAACCCTCATCTCTGCTACTCATTTGGTTGGAGAA- 11919483 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 |||| || |||| ||| | | || || ||||| ||||| | || || Sbjct 11919482 -TGAGGCCAGGCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGC-----------AA 11919435 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33752 |||||||||||||| |||| ||||| || | || | |||||||| ||| | || Sbjct 11919434 AAGAAGATTCCTTCCACTGTGGCAAACGCTACAACACGTTCTCCATAGGCGGTCTCTTTG 11919375 Query 33753 T-CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA-CACAAGGCATCGTTTCTA 33810 | | || ||||| ||||| | | || | || || ||||||||||||| || | Sbjct 11919374 TTCCTG-ATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTCCA 11919316 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||| || ||||| | | |||| || |||||||| | ||| || || | |||| Sbjct 11919315 CGGCGTTGAAGAGCAACTCCCTTTCCTTGGCATCTTTAATGTCAGTGTCAATGAGGAGAC 11919256 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | |||||||| ||||| |||||||| ||||| || || || | ||||||||| | || | Sbjct 11919255 TGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCGGGCTT 11919196 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 |||| ||||| |||||| | ||| || || | || || ||||| || |||| | Sbjct 11919195 CGGTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTCTCATTGGTGATGCCATGGC 11919136 Query 33991 TGGCTGCAAAAAACGCCAA 34009 |||| | || || ||||| Sbjct 11919135 TGGCAACTAAGAAGGCCAA 11919117 >seq139 Length=3560323 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 1651056 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 1650997 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| |||||||| || ||||| ||||| || || | | |||| Sbjct 1650996 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1650937 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 1650936 CTGTTTCTTATACCATA 1650920 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 1634486 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 1634427 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 1634426 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 1634367 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || |||| ||| || || | ||||||| || Sbjct 1634366 AGGCTCCAGGTAAATAGCAAATGCTCCAGGTCG 1634334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || |||||||| || | | || || || | ||| || || || || || || ||| Sbjct 1639122 TAGGTTTCATATGGGCCATGTTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 1639063 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||||||||||||||| | |||||| | || || || || || ||||| ||||| Sbjct 1639062 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 1639003 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | |||||||| || || || | ||||| || ||||| || ||||| | ||| | Sbjct 1639002 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACGT 1638943 Query 62808 TTATTAGA 62815 ||||| || Sbjct 1638942 TTATTTGA 1638935 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| |||||||| ||||| | || || | || || || || || |||| Sbjct 1618135 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 1618076 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1618075 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1618016 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 1618015 GTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCAT 1617970 >seq190 Length=2579675 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| || | |||||||| | ||||||||||||| ||| Sbjct 2425151 GTTACTTTCTATGATGTGTATATTATTCTCCAAGCTTTTGTACTGACTACTGCAGTATTT 2425092 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | |||||| | |||||||||||| |||| ||||||||| ||| ||| | |||| Sbjct 2425091 CTTGGTTTGACTATGTATACTCTACAATCTAAGAAAGATTTCAGCAAATTTGGAGCAGG 2425033 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| Sbjct 2439437 GCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCACA 2439378 Query 188233 TACGAATGG 188241 | || |||| Sbjct 2439377 TCCGCATGG 2439369 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299 || |||||||||||||||||| |||||| ||| ||| ||| ||||| || | ||| Sbjct 2431642 GCCTTTCTAAGAAAAGTCTACACCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACA 2431583 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343 ||||| | ||||||||||| || | || |||||||||||||| Sbjct 2431582 TCTGCATTTTTTTTATACTTCGAGTCTATACGGACATTTATACA 2431539 >seq410 Length=980372 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | |||||| || || ||||| || ||||| ||||| ||||| | Sbjct 303771 CCTCATCTCTGCTAATAAGTTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCTCGCTTCT 303712 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || ||||| || ||||| ||||||||||| || ||||| || || | Sbjct 303711 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 303652 Query 33724 C 33724 | Sbjct 303651 C 303651 >seq115 Length=3908719 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 3778542 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 3778483 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 | ||| ||||| | ||||||||| || || ||||| ||||||||||| ||||||||||| Sbjct 3778482 AACCAGAATATAGCAGCGAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3778424 >seq28 Length=10593136 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 188175 TCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACATA 188234 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 3155467 TCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGCGTACACATC 3155526 Query 188235 CGAATGG 188241 || |||| Sbjct 3155527 CGCATGG 3155533 >seq5245 Length=10255 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 188175 TCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACATA 188234 |||||||||||||||||||||||||||| ||||| ||||| || |||||||| ||||| Sbjct 7585 TCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCAGCCAGCGTACACATC 7526 Query 188235 CGAATGG 188241 || |||| Sbjct 7525 CGCATGG 7519 >seq193 Length=2547828 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||| |||| |||||||||||||||||| ||||| ||||| ||||||||| |||||| Sbjct 1233763 GCTCCTACATCAAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGCTTGCACA 1233704 Query 188233 TACGAATGG 188241 | || |||| Sbjct 1233703 TCCGCATGG 1233695 >seq75 Length=5136827 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| Sbjct 182098 GCTCCTTCATCGAGGACGACTTCAACTATGGCAGCTGTGTGGCCTCTGCCAGCGTACACA 182039 Query 188233 TACG 188236 | || Sbjct 182038 TCCG 182035 >seq513 Length=619226 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||| |||| ||||| |||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 213804 TGCTCCTACATCAAGGACAACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGCGTACAC 213745 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 213744 ATCCGCATGG 213735 >seq30 Length=9872594 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 || |||||||||||||| ||||||||||||| ||||| ||||| ||||||||| | ||| Sbjct 3904942 TGGTCCTCCATCGAGGATGACTTCAACTATGGCAGCTGTGTGGCCTCTGCCAGCATACAC 3904883 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 3904882 ATCCGCATGG 3904873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629725851321120