Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq115 120 3e-22 seq139 102 8e-17 >seq115 Length=3908719 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||||| |||| ||| | Sbjct 3778544 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCT 3778485 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||||||||| ||||| || || ||||| ||||| || ||||| ||||| | Sbjct 3778484 TTAACCAGAATATAGCAGCGAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3778425 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 3778424 CCACCACCCTTTCCCC 3778409 >seq139 Length=3560323 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 1651056 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 1650997 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 1650996 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1650937 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 1650936 CTGTTTCTTATACCAT 1650921 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | |||| || Sbjct 1652904 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCCGCAATATGGATGT 1652845 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | ||| || Sbjct 1652844 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATGTTGAGAATGGTTT 1652785 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATA 37010 | ||||| || ||||| ||||||||||| Sbjct 1652784 TCTGAGAGATTTCCCATACCGTTTTATA 1652757 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| | || || | | || Sbjct 1623627 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 1623568 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | |||||||||||| | | Sbjct 1623567 TATGTTTCAATAGCAGCATCGATATCTTCTTCGTGAATCCCCACAGATACCCTCATCAAC 1623508 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 1623507 ATATGTTGTGGTCTTTC 1623491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468456547649760