Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10 194 2e-44 seq139 122 1e-22 seq410 116 5e-21 seq115 98.7 1e-15 seq93 89.7 7e-13 seq9012 84.2 3e-11 >seq10 Length=16450340 Score = 194 bits (214), Expect = 2e-44 Identities = 527/800 (66%), Gaps = 29/800 (4%) Strand=Plus/Minus Query 49599 GGCATTTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GA 49655 |||||| | ||| |||| |||||| | || || | |||| || ||| || | Sbjct 11919898 GGCATTCA-GTTCATTTAGAAGTCAGCGTCCAGGGTAAAAGAGTTCTCTGTCGGACGTGG 11919840 Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| ||| |||| | || ||||| ||||| | || || || || || || || | ||| Sbjct 11919839 CATCACTTCCATCCTCTGATATTCGCCCACTCTCTTCTCAAAGAAGTTCGTCTTCCTTTC 11919780 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGA-TTGGTAACATTATAAAtttttttAAATC 49774 ||| ||||| |||||||| ||||| ||| || || | ||| || |||| | Sbjct 11919779 TCGTGAAATATTCTCCATGAAGTCAAATGGACTTTCTATTCGGA-AAACCTTGCTAAAAC 11919721 Query 49775 CCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||| || | | |||||| | || ||||| || || ||||||| |||| Sbjct 11919720 CCAGCTCCAGCCTGAGTCTATCAGTCACGAATTCAATGTACCCCTTCATCAGAGTGCAAT 11919661 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| | || | || ||||| | ||| | || || || || || || || || | Sbjct 11919660 TCATCGCAATGACATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTATCCCAACAG 11919601 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 | | || || || | | || | | || ||| |||| | ||||| |||| Sbjct 11919600 CGTTGGTGATGATCTCTTTCACCCTCTGCTCTGCAGGTTTGTGCAGCAGGTGTTTGAACA 11919541 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 ||| || || || || ||||||| |||||| ||||| ||| | | || |||||| || Sbjct 11919540 TCAGGCAGGCAAAGTCTCAGTGCAAACCCTCATCTCTGCTACTCATTTGGTTGGAGAA-- 11919483 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 |||| || |||| ||| | | || || ||||| ||||| | |||||| Sbjct 11919482 TGAGGCCAGGCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGCAAA----------- 11919434 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 ||||||||||||| |||| |||||| || |||| | |||||||| |||| | || | Sbjct 11919433 AGAAGATTCCTTCCACTGTGGCAAACGCTACAACACGTTCTCCATA---GGCGGTCTCTT 11919377 Query 50135 -GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA-CACAAGGCATCGTTTCT 50187 || ||||| ||||| | | || | || || ||||||||||||| || Sbjct 11919376 TGTTCCTGATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTCC 11919317 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | ||| || ||||| | | |||| || |||||||| | ||| || || | ||| Sbjct 11919316 ACGGCGTTGAAGAGCAACTCCCTTTCCTTGGCATCTTTAATGTCAGTGTCAATGAGGAGA 11919257 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || |||||||| ||||| |||||||| ||||| || || || | ||||||||| | || Sbjct 11919256 CTGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCGGGCT 11919197 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 ||||| ||||| |||||| | ||| || || | || || ||||| || || | Sbjct 11919196 TCGGTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTCTCATTGGTGATGCCATGG 11919137 Query 50368 CTGGCTGCAAAAAACGCCAA 50387 ||||| | || || ||||| Sbjct 11919136 CTGGCAACTAAGAAGGCCAA 11919117 >seq139 Length=3560323 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 1651056 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 1650997 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| |||||||| || || || ||||| || || | | |||| Sbjct 1650996 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1650937 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 1650936 CTGTTTCTTATACCATA 1650920 Score = 100 bits (110), Expect = 4e-16 Identities = 138/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 79299 GTATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 ||| |||||||| || || |||||| ||| | ||||| || || || || ||||| Sbjct 1639123 GTAGGTTTCATATGGGCCATGTTCCTT---GGCCAGATCACAGCTGGCTTCCAAGGCTCC 1639067 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 |||||||||||||| || || | |||||| | || || ||| | || ||||| || Sbjct 1639066 ATAATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGG 1639007 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 ||| | | |||||||| || ||||| | ||||| || ||||| || ||||| | ||| Sbjct 1639006 ATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATG 1638947 Query 79476 TCTCTTATTAGA 79487 | ||||| || Sbjct 1638946 ACGTTTATTTGA 1638935 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 1634482 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 1634423 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 1634422 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 1634363 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCG 80087 |||| ||| || || | |||| ||||| Sbjct 1634362 TCCAGGTAAATAGCAAATGCTCCAGGTCG 1634334 >seq410 Length=980372 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||||||||| || ||||| || ||||| ||||| ||||| | Sbjct 303771 CCTCATCTCTGCTAATAAGTTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCTCGCTTCT 303712 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || ||||| || || || || ||||||||||| || |||||||| || | Sbjct 303711 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 303652 Query 50102 CAAC 50105 | || Sbjct 303651 CCAC 303648 >seq115 Length=3908719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 3778542 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 3778483 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 | ||| ||||| | || ||||| || || ||||| ||||||||||| || |||||||| Sbjct 3778482 AACCAGAATATAGCAGCGAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 3778423 Query 50104 AC 50105 || Sbjct 3778422 AC 3778421 >seq93 Length=4592439 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/209 (70%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAA--CCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||||| ||| | ||| ||| | | ||| |||||| Sbjct 2488804 TCCAGTAGAACCAAAACCCCCTGAGCCCCTTTCAGTGTC--ATCCAAAACTTGAACTTCC 2488861 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | |||||||||| | || |||| | | || ||||| || |||| || || | ||| Sbjct 2488862 TCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCATT-TTT 2488920 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | || | ||| ||| ||||| | | || || | ||||| ||||||||| Sbjct 2488921 ACTTCAAAATTTTCTTTGCCAAAATTAAATAATACAACACCAAGATTTCCTCTATAATCT 2488980 Query 47881 TCGTCTATTACACCACCTCCTATATCAAT 47909 || ||||| |||||| |||||| ||| || Sbjct 2488981 TCATCTATAACACCAGCTCCTACATCTAT 2489009 >seq9012 Length=6576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAA--CCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||||| ||| | ||| ||| | | ||| |||||| Sbjct 4718 TCCAGTAGAACCAAAACCCCCTGAGCCCCTTTCAGTGTC--ATCCAAAACTTGAACTTCC 4775 Query 47761 TCCAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATT 47819 || | |||||||||| | | | |||| | | || ||||| || |||| || || | || Sbjct 4776 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCATT-TT 4834 Query 47820 TACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 47879 ||| | || | ||| ||| ||||| || | || || | ||||| |||||||| Sbjct 4835 TACTTCAAAATTTTCTTTGCCAAAATTAAATAGTACAACACCAAGATTTCCTCTATAATC 4894 Query 47880 TTCGTCTATTACACCACCTCCTA 47902 ||| ||||| |||||| |||||| Sbjct 4895 TTCATCTATAACACCAGCTCCTA 4917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718164166192560