Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 187 3e-42 seq139 132 6e-26 seq410 111 2e-19 seq115 102 1e-16 >seq10 Length=16450340 Score = 187 bits (206), Expect = 3e-42 Identities = 453/678 (67%), Gaps = 25/678 (4%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| ||| |||| | || ||||| ||||| | || || || || || ||||| | ||| Sbjct 11919839 CATCACTTCCATCCTCTGATATTCGCCCACTCTCTTCTCAAAGAAGTTCGTCTTCCTTTC 11919780 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGA-TTGGTAACATTATAAAtttttttAAATC 41879 ||| ||||| |||||||| ||||| ||| || || | ||| || |||| | Sbjct 11919779 TCGTGAAATATTCTCCATGAAGTCAAATGGACTTTCTATTCGGA-AAACCTTGCTAAAAC 11919721 Query 41880 CCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 ||| || | | |||||| | | |||||| || || ||||||| |||| Sbjct 11919720 CCAGCTCCAGCCTGAGTCTATCAGTCACGAATTCAATGTACCCCTTCATCAGAGTGCAAT 11919661 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||| | || | || ||||| | ||| | || || || || || || || || | Sbjct 11919660 TCATCGCAATGACATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTATCCCAACAG 11919601 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAAA 42057 ||| || || || |||| | ||| | || ||| | || | ||||| || Sbjct 11919600 CGTTGGTGATGATC--TCTTTCACCCTCTGCTCTGCAGGTTTGTGCAGCAGGTGTTTGAA 11919543 Query 42058 CATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAA 42117 ||||| || || || || ||||||| |||||||||||| ||| | | || |||||| || Sbjct 11919542 CATCAGGCAGGCAAAGTCTCAGTGCAAACCCTCATCTCTGCTACTCATTTGGTTGGAGAA 11919483 Query 42118 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGA 42177 |||| || |||| ||| | | || || ||||| ||||| | |||||| Sbjct 11919482 --TGAGGCCAGGCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGCAAA--------- 11919434 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACT 42234 ||||||||||||| |||| ||||| || | || | |||||||| ||| | | Sbjct 11919433 --AGAAGATTCCTTCCACTGTGGCAAACGCTACAACACGTTCTCCATAGGCGGTCTCTTT 11919376 Query 42235 GT-CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA-CACAAGGCATCGTTTCT 42292 || | || ||||| ||||| | | || | || || ||||||||||||| || Sbjct 11919375 GTTCCTG-ATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTCC 11919317 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | ||| || ||||| | | |||| || |||||||| | || || || | ||| Sbjct 11919316 ACGGCGTTGAAGAGCAACTCCCTTTCCTTGGCATCTTTAATGTCAGTGTCAATGAGGAGA 11919257 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || |||||||| ||||| |||||||| ||||| || || || | ||||||||| | ||| Sbjct 11919256 CTGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCGGGCT 11919197 Query 42413 TCGGTAACCTGTACTTCT 42430 ||||| | ||| |||||| Sbjct 11919196 TCGGTGATCTGAACTTCT 11919179 >seq139 Length=3560323 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| |||||||||||||| || || |||||||| ||||| | Sbjct 1651056 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 1650997 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| |||||||| || ||||| ||||| || || | | || | Sbjct 1650996 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1650937 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 1650936 CTGTTTCTTATACCAT 1650921 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| |||||||| ||||| | || || || || || || || || |||| Sbjct 1618135 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 1618076 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1618075 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1618016 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1618015 GTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCAT 1617970 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || || ||||| || | || | ||| || ||||| || || || || ||||||||| Sbjct 1639122 TAGGTTTCATATGGGCCATGTTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 1639063 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || || | |||||| | || || || || || ||||| ||||| Sbjct 1639062 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 1639003 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | | |||||||| || ||||| | ||||| || ||||| || ||||| | || | Sbjct 1639002 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACGT 1638943 Query 71563 TTATTAGA 71570 ||||| || Sbjct 1638942 TTATTTGA 1638935 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 1634482 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 1634423 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 1634422 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 1634363 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 1634362 TCCAGGTAAATAGC 1634349 >seq410 Length=980372 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||||||||| || ||||| || ||||| ||||| ||||| | Sbjct 303771 CCTCATCTCTGCTAATAAGTTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCTCGCTTCT 303712 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || ||||| || || || || ||||||||||| || ||||| || || | Sbjct 303711 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 303652 Query 42207 C 42207 | Sbjct 303651 C 303651 >seq115 Length=3908719 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 3778542 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 3778483 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 | ||| ||||||| || ||||| || || ||||| ||||||||||| || |||||||| Sbjct 3778482 AACCAGAATATAGCAGCGAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3778424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671041431797040