Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq29 100 2e-16 seq73 96.9 3e-15 seq50 91.5 1e-13 seq5 82.4 6e-11 >seq29 Length=10643064 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 9522374 CCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAC 9522433 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 9522434 AAAGTGCGCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 9522493 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||| ||| ||||||| ||||| ||| || Sbjct 9522494 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTATCGTATCCGAGGGTTCAACC 9522553 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || || || ||||| || ||||| ||||| || Sbjct 9522554 TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCATCTT 9522603 >seq73 Length=5133329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | ||||| ||||| ||||| || |||||||| || |||| || | Sbjct 5047267 TCTCAACACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAA--AGAACG-TC-C 5047212 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | ||| |||||||| | |||| | ||| || | ||||||||||| | Sbjct 5047211 GTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGACCAGGAGGAATTCCTTCCTC 5047152 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || | | ||| || ||||| ||||| | ||||| ||| || || || ||||| Sbjct 5047151 ATCCTAGTTCTTGGTC-TTACATTTTCTGTTGTATCCAAGGGTTCAACCTCGAAAGTAAT 5047093 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 ||| |||||||| || |||| |||||||| ||||||| Sbjct 5047092 GGTCTTACCTGTTAGGATTTTCACAAAAATCTGCATAT 5047055 >seq50 Length=7348857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 15147 ATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG 15206 |||| || || | |||||| ||||| || ||||| ||||||| || | | | ||| Sbjct 813251 ATCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTGGTCAGACAAAGTACTCC 813310 Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 | ||||| | ||| |||||||| | |||| | ||| || || ||||||||||| | Sbjct 813311 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 813370 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT--AAGGT 15324 | || || ||| ||||||| ||||||| |||| ||| | | || | || Sbjct 813371 TATCCTGGATCTTGGCCTTTACATTTTCTATCATATCTGAGAGTTCAAGACCTTGAGAGT 813430 Query 15325 AATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || || || || ||||| |||||||| ||||| || Sbjct 813431 GATGGTCTTCCCCGTGAGGGTTTTCACAAAAATCTGCATCTT 813472 >seq5 Length=22519077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| || ||||| ||||||||||| ||| | | |||||| | ||| ||| || Sbjct 15114101 GTGGACTCCTTTTGAATGTTGTAATCAGACAGAGTACATCTGTCTTCCAGTTGCTTGTCA 15114042 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||| | ||| || || ||||||||||| || || || ||| |||| Sbjct 15114041 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 15113982 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| ||||||| ||||| | | || || | || ||||| || || | || ||| Sbjct 15113981 ACATTTTCTATTGTATCCGAGGGTCCAACCTCGAGAGTGATGGTCTTCCCCATGAGGGTT 15113922 Query 15347 TTTACAAAAATTTGCATATT 15366 || |||||||| ||||| || Sbjct 15113921 TTCACAAAAATCTGCATCTT 15113902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362127758556414