Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq92 98.7 6e-16 seq356 87.8 1e-12 seq5 84.2 1e-11 >seq92 Length=4639795 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/227 (71%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 33159 ACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCAT 33218 |||| | ||| | || ||||| ||||| || ||||||||||||||| | || ||| | Sbjct 2442405 ACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACATTCGTCTT 2442464 Query 33219 CCAATTGCTTTCCA-CTA---AATATTAAACGTTGCTGGTCCGTGGGTATGCC-TTCTTT 33273 ||| |||||| ||| ||| || || | | ||||| || | ||| || || ||||| Sbjct 2442465 CCAGTTGCTTGCCAGCTAAGTAAGATCAGTCTTTGCTCATCAGAGGGAATTCCTTTCTTA 2442524 Query 33274 TTC--GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 ||| | | | ||| ||||| ||| || || || ||||| ||| |||||||| Sbjct 2442525 TTCTGGATCTTGGCC---TTTACATTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTG 2442581 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGT 33378 || || || ||| |||| ||||| | |||||| ||||| || |||| Sbjct 2442582 ATGGTCTTCCCCTTAAGGGTTTTCATGAAAATCTGCATCTTGGTGGT 2442628 >seq356 Length=1115386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || | |||| |||| |||| || |||||||| || || ||||||||||| Sbjct 17709 ACCACCCCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 17768 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| ||| ||| || | | |||||||| | ||| Sbjct 17769 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 17828 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || ||| ||| || | | ||| ||||| |||| | || Sbjct 17829 GATGCCTTCCTTATCCTGGATCTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCCAC 17888 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || || || || || || || || || ||||| |||||||| || Sbjct 17889 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 17939 >seq5 Length=22519077 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| | ||| | || ||||| ||||| || ||||||||||||| | | | | Sbjct 15114119 CGCAACACAAGATGGACAGTGGACTCCTTTTGAATGTTGTAATCAGACAGAGTACATCTG 15114060 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||| || ||| || | | |||||| || | || || ||||| || Sbjct 15114059 TCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 15114000 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| ||||| ||| || || || |||| ||| || ||||| Sbjct 15113999 TCCTGGATCTTGGCC---TTTACATTTTCTATTGTATCCGAGGGTCCAACCTCGAGAGTG 15113943 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || ||| | || ||||| || ||||| ||||| || Sbjct 15113942 ATGGTCTTCCCCATGAGGGTTTTCACAAAAATCTGCATCTT 15113902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318732323021292