Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq146 120 3e-22 >seq146 Length=3351112 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||||||||||||||||| || || | Sbjct 1997238 AGGGTTACCTGGGTTGCCAAGCCTTGTCCGAGATGATCCAGTTTTACCTGGAAGAGGTGA 1997179 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || | |||| ||| || ||| |||| ||||| ||| ||||| |||| Sbjct 1997178 TGCCCCAGGCCGAGAGCCAGGGCCCGGACATCAAGGAGCCCGTGAGCTCGCTGGGGGAGA 1997119 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 1997118 AGCTGAAGACGCTGAGGCT 1997100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| ||||| | ||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 1995059 AGCTCCAGGAGAGAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 1995000 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 |||| || |||||||| ||||| || Sbjct 1994999 TAGAGGCCTACATGACAATGAAGAT 1994975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547299460535040