Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq66 143 4e-29 seq88 122 1e-22 >seq66 Length=6061426 Score = 143 bits (158), Expect = 4e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | |||||| |||||| ||||| || | || || ||||| |||||| Sbjct 2068813 GTCTGGAACAACCGCTCGTCATCCCATTCGGGATGCTCCTGCTTAAGCACATCACACACT 2068872 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||| | ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 2068873 CTGTTATGTTCACGCAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAC 2068932 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | |||| | ||| || || | || || |||||||| | Sbjct 2068933 ACCTCCTGGCCCACGGCAAACCGCAGGTGTTCAGGGACATGAGGCGGGTAGATCATCTCA 2068992 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| ||||||||| | ||| ||||| | || || ||||| Sbjct 2068993 GCCTGGGTATCTTTGACTGTGGGAGGATATACCTCTCCATCAAT 2069036 Score = 125 bits (138), Expect = 1e-23 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||||||||| || || |||||| ||| ||| | || Sbjct 2069910 TCTTACCCCATGACCCAGTCCTTTAGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 2069969 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 2069970 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 2070029 Query 10148 GGGAGTGAA 10156 ||| |||| Sbjct 2070030 AGGAATGAA 2070038 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| || || || | || || ||||| ||| || | Sbjct 2070536 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGAGCTCTGGTA 2070595 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| || |||||| || ||||| | Sbjct 2070596 TAATAGGAGAGATTCGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGTGCATTGTACGTT 2070655 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||||||| ||||| ||||| Sbjct 2070656 GGTGGGCTGTCAATCAAATCTGATCTGGCTGAA 2070688 >seq88 Length=4696428 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || ||||| || ||||| | |||||||| | || || |||||| | ||| Sbjct 4510311 AAGCCCATCTCACCGCCAAATGTGCTTGACTTCCAGTACTCGGGAGAACAGATGGCATTC 4510252 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||| | || | || ||||| || |||||| Sbjct 4510251 CCTAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 4510192 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | ||| | ||| ||||||| || || |||||| Sbjct 4510191 GAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGGGTAGAACTCCAAGGCATCAATGTCT 4510132 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | ||| || || || ||||| |||||| Sbjct 4510131 CCATATAGCTCCTCCAATTCAGCTGCCATCTCCTTCTCTCCT 4510090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708421585649760