Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10 192 7e-44 seq139 131 2e-25 seq410 111 2e-19 seq115 111 2e-19 >seq10 Length=16450340 Score = 192 bits (212), Expect = 7e-44 Identities = 489/738 (66%), Gaps = 21/738 (3%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||| |||| | || ||||| ||||| | || || || || || || || | ||| Sbjct 11919839 CATCACTTCCATCCTCTGATATTCGCCCACTCTCTTCTCAAAGAAGTTCGTCTTCCTTTC 11919780 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGA-TTGGTAACATTATAAAtttttttAAATC 33118 ||| ||||| |||||||| ||||| ||| || || | ||| || |||| | Sbjct 11919779 TCGTGAAATATTCTCCATGAAGTCAAATGGACTTTCTATTCGGA-AAACCTTGCTAAAAC 11919721 Query 33119 CCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||| || | | |||||| | |||||||| || || ||||||| |||| Sbjct 11919720 CCAGCTCCAGCCTGAGTCTATCAGTCACGAATTCAATGTACCCCTTCATCAGAGTGCAAT 11919661 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| | || | || ||||| | ||| | || || || || || || || || | Sbjct 11919660 TCATCGCAATGACATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTATCCCAACAG 11919601 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 | | || || || | | || | | || ||| |||| | ||||| |||| Sbjct 11919600 CGTTGGTGATGATCTCTTTCACCCTCTGCTCTGCAGGTTTGTGCAGCAGGTGTTTGAACA 11919541 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 ||| || || || || ||||||| |||||| ||||| ||| | | || |||||| || Sbjct 11919540 TCAGGCAGGCAAAGTCTCAGTGCAAACCCTCATCTCTGCTACTCATTTGGTTGGAGAA-- 11919483 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 |||| || |||| ||| | | || || ||||| ||||| | || ||| Sbjct 11919482 TGAGGCCAGGCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGC-----------AAA 11919434 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGT 33475 ||||||||||||| |||| ||||| || | || | |||||||| ||| | ||| Sbjct 11919433 AGAAGATTCCTTCCACTGTGGCAAACGCTACAACACGTTCTCCATAGGCGGTCTCTTTGT 11919374 Query 33476 -CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA-CACAAGGCATCGTTTCTAT 33533 | || ||||| ||||| | | || | || || ||||||||||||| || | Sbjct 11919373 TCCTG-ATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTCCAC 11919315 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 ||| || ||||| | | |||| || |||||||| | ||| || || | ||||| Sbjct 11919314 GGCGTTGAAGAGCAACTCCCTTTCCTTGGCATCTTTAATGTCAGTGTCAATGAGGAGACT 11919255 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 |||||||| ||||| |||||||| ||||| || || || | ||||||||| | || || Sbjct 11919254 GTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCGGGCTTC 11919195 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 ||| ||||| |||||| | ||| || ||| |||| || ||||| || || | || Sbjct 11919194 GGTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTCTCATTGGTGATGCCATGGCT 11919135 Query 33714 GGCTGCAAAAAACGCCAA 33731 ||| | || || ||||| Sbjct 11919134 GGCAACTAAGAAGGCCAA 11919117 >seq139 Length=3560323 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 1651056 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 1650997 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| |||||||| || ||||| ||||| || || | | |||| Sbjct 1650996 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1650937 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 1650936 CTGTTTCTTATACCATA 1650920 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 1634486 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 1634427 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 1634426 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 1634367 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || |||| ||| || || | ||||||| || Sbjct 1634366 AGGCTCCAGGTAAATAGCAAATGCTCCAGGTCG 1634334 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| ||| |||||||| ||||| | || || || || || || || || |||| Sbjct 1618135 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGAA 1618076 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1618075 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 1618016 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 1618015 GTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCAT 1617970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || ||||| || | | || || || ||||| || || || || || || ||| Sbjct 1639122 TAGGTTTCATATGGGCCATGTTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 1639063 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 1639062 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 1639003 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | |||||||| || || || | ||||| || ||||| || ||||| | ||| | Sbjct 1639002 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATAGGGCGATGACGT 1638943 Query 62757 TTATTAGA 62764 ||||| || Sbjct 1638942 TTATTTGA 1638935 >seq410 Length=980372 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||||||||| || ||||| || ||||| ||||| ||||| | Sbjct 303771 CCTCATCTCTGCTAATAAGTTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCTCGCTTCT 303712 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || ||||| || || || ||||||||||| || ||||| || || | Sbjct 303711 TGAGCCAGAAGATCGACGCGAAAGAGCCGGAGAAGAAGATTCCCTCCACTGCGGCGAACG 303652 Query 33446 C 33446 | Sbjct 303651 C 303651 >seq115 Length=3908719 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 3778542 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 3778483 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 | ||| ||||| | ||||||||| || || ||||| ||||||||||| ||||||||||| Sbjct 3778482 AACCAGAATATAGCAGCGAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3778424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622856452166640