Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq29 95.1 9e-15 seq73 87.8 1e-12 seq110 82.4 5e-11 >seq29 Length=10643064 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 9522374 CCACCACGAAGTCTCAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGAC 9522433 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||||| | ||| |||||||| | |||| | || || || ||| Sbjct 9522434 AAAGTGCGCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 9522493 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| || ||| ||||||| ||||| ||| || Sbjct 9522494 ATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTATCGTATCCGAGGGTTCAACC 9522553 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || ||||| || ||||| ||||| || Sbjct 9522554 TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCATCTT 9522603 >seq73 Length=5133329 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC 15020 ||| || || | ||||| || || ||||| || |||||||| || || | || | Sbjct 5047267 TCTCAACACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAAAGA-ACGTC---C 5047212 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 |||||| | ||| |||||||| | |||| | || || | ||||||||||||| Sbjct 5047211 GTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGACCAGGAGGAATTCCTTCCTC 5047152 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || | | || | | ||||| ||||| | ||||| ||| || || || ||||| Sbjct 5047151 ATC-CTAGTTCTTGGTCTTACATTTTCTGTTGTATCCAAGGGTTCAACCTCGAAAGTAAT 5047093 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15178 ||| |||||||| || |||| |||||||| ||||||| Sbjct 5047092 GGTCTTACCTGTTAGGATTTTCACAAAAATCTGCATAT 5047055 >seq110 Length=4187069 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| | || || ||| |||||||| || Sbjct 3764695 CCACCACGAAGTCTCAACACAAGATGAAGAATGGACTCCTTTCA-ATGTTGTAGTCAA-- 3764751 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || || || ||||||| | ||| |||||||| | || | | || || || ||| Sbjct 3764752 AGTATG-TC-CGTCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTTTGCTGATCAGGAGGA 3764809 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||||||| ||||||| ||||| ||| || Sbjct 3764810 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACC 3764869 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 3764870 TCGAGAGTGATGGTCTTCCCTGTGAGGGTTTTCACGAAAATCTGCATCTT 3764919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357341238497390