Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq93 98.7 3e-16 seq9012 93.3 1e-14 >seq93 Length=4592439 Score = 98.7 bits (108), Expect = 3e-16 Identities = 188/273 (69%), Gaps = 13/273 (5%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| |||||| | ||| | || || || || | | Sbjct 2489068 TTCCTTCTGGGTGCTATGGAAGAGGAGCTCCACGTTCCAGCTTGGCTGCAAAACACTTTA 2489009 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || ||||||||||| ||| ||| | ||| || || |||||||||| |||| Sbjct 2489008 TAGATGTAGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATCTTGGTGTTGTATTAT 2488949 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | | |||| | | | || ||||| | ||||| ||| | |||| Sbjct 2488948 TTAATTTTGGCAAAGAAAATTTTGA-AGTAAAAATGGTGACCGAATTGCACAGCTCATTT 2488890 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||||| | | |||| ||||| |||||| ||| ||| || || || | | Sbjct 2488889 GTGAA----CGGATTTTTTATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGACACTG 2488836 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||| || | || ||||| ||||| |||| Sbjct 2488835 AAAGGGGCTCAGGGGGTTTTGGTTCTACTGGAA 2488803 >seq9012 Length=6576 Score = 93.3 bits (102), Expect = 1e-14 Identities = 188/273 (69%), Gaps = 12/273 (4%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| |||||| | ||| | || || || || | | Sbjct 4983 TTCCTTCTGGGTGCTATGGAAGAGGAGCTCCACGTTCCAGCTTGGCTGCAAAACACTTTA 4924 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | || || || ||||||||||| ||| ||| | ||| || || |||||||||| ||| Sbjct 4923 TAGACGTAGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATCTTGGTGTTGTACTAT 4864 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | | |||| | | | || ||||| | ||||| ||| | |||| Sbjct 4863 TTAATTTTGGCAAAGAAAATTTTGA-AGTAAAAATGGTGACCGAATTGCACAGCTCATTT 4805 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | ||||| ||||| |||||| ||| ||| || || || | | Sbjct 4804 GTG-AACGGATTTTTTT--ATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGACACTG 4750 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||| || | || ||||| ||||| |||| Sbjct 4749 AAAGGGGCTCAGGGGGTTTTGGTTCTACTGGAA 4717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138662407680024