Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq69 100 2e-16 seq247 95.1 9e-15 seq29 95.1 9e-15 seq5 89.7 4e-13 seq356 86.0 5e-12 >seq69 Length=5728823 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||||| || || ||| |||||| ||||||||||| || || Sbjct 4210544 GCCACCCCTGAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGA 4210485 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || || | ||| || || ||||| ||||| ||||| || || | || Sbjct 4210484 GAGAGTGCGACCATCCTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGG 4210425 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 4210424 GATGCCCTCCTTGTC 4210410 >seq247 Length=1816170 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||||| || || ||| |||||| ||||||||||| || || Sbjct 1422546 GCCACCCCTGAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGA 1422605 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| ||| | || || | ||| || || ||||| ||||| ||||| || || | || Sbjct 1422606 CAGAGCGCGACCATCCTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGG 1422665 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 |||||||||||| | || || ||| ||| | | | || | |||||| Sbjct 1422666 GGTGCCCTCCTTGTCTC-GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCCAC 1422724 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || |||| | || ||||| ||||||||| Sbjct 1422725 CTCAAGGGTGATGGTCTTGCCAGTCAGGCTCTTCACAAAGATCTGCATC 1422773 >seq29 Length=10643064 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| |||||| ||| |||||||| ||||| ||||| | | | || |||| Sbjct 9522388 CAACACAAGATGAAGCGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGCCCGTC 9522447 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 9522448 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 9522507 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | || || | || ||||| | || || || Sbjct 9522508 CTGGATCTTGGCCTTCACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 9522567 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | ||||| || |||||||||||| || Sbjct 9522568 CTTCCCCGTGAGGGTTTTCACGAAAATCTGCATCTTG 9522604 >seq5 Length=22519077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | ||| | ||| ||| |||||||| ||||||||||| ||| | | | Sbjct 15114122 AGTCGCAACACAAGATGGACAGTGGACTCCTTTTGAATGTTGTAATCAGACAGAGTAC-A 15114064 Query 48609 TC-GTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 || ||| |||| ||||| | ||||| ||||||| || ||||| | |||| || || Sbjct 15114063 TCTGTCTTCCAGTTGCTTGTCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 15114004 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || ||||| |||||| | | | || || | | ||||| | || Sbjct 15114003 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTCCAACCTCGAGAGT 15113944 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||| | | ||||| ||||||||||||||| || Sbjct 15113943 GATGGTCTTCCCCATGAGGGTTTTCACAAAAATCTGCATCTTG 15113901 >seq356 Length=1115386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| |||| || || ||| |||||| || || ||||||||||| Sbjct 17710 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 17769 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 17770 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 17829 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || ||||| ||| ||| | | | || | ||||||| Sbjct 17830 ATGCCTTCCTTATCCTGGATCTTGGCTTTAACATTCTCAATGGTGTCACTGGGCTCCACC 17889 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || || || || || ||||| Sbjct 17890 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 17936 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 17481 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 17540 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 17541 AAGAGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 17600 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| ||||| || ||||| || ||| | | | || | ||||| Sbjct 17601 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCAA 17660 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 17661 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 17708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380883494242242