Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq395 91.5 3e-13 seq49 87.8 3e-12 >seq395 Length=935364 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||| | ||| | ||| || || || Sbjct 144877 ACCACC-CGAAGTCTCAACACAAGATGGACAGTGGACTCCGTTTGAATGTTGTAGTC--- 144932 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || |||| ||| || |||||||| || | ||| || ||||| || Sbjct 144933 -AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTCACTGATCAGGAGG 144991 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || |||||||| ||| ||||| || | || || Sbjct 144992 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGCTCAAC 145051 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | |||||||||||||| || | | ||||| | ||| |||||||| Sbjct 145052 CTTGAGAGTAATGGTTTTCCCCATGAGAGTTTTTACGAAAATCTGCAT 145099 >seq49 Length=7431896 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/240 (68%), Gaps = 7/240 (3%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | | ||| || || | || ||||| | ||| | ||| || Sbjct 4821944 TTTCTTAGCACCACCACGAGGTCTCAACACAAGGTGAAAAGTGGACTCCGTTTGAATGTT 4821885 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| ||| | || |||||||| ||||||||||| || | ||| || || Sbjct 4821884 GTAGTC----AAAGGACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAGTCTTTGCTG 4821829 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| | Sbjct 4821828 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCCTATCCGT 4821769 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || ||||||| || | || || | | ||||| | ||| |||| ||| || Sbjct 4821768 AGGTTCAACCTCTAGAG---TGCTCTTCCCTATGAGGGTTTTCACGAAAATCTACATCTT 4821712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905004144313200