Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1765 89.7 5e-13 seq139 86.0 6e-12 seq5750 84.2 2e-11 seq29 84.2 2e-11 >seq1765 Length=41513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| || ||| ||| ||||| ||||| || |||| Sbjct 9647 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCG 9706 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || ||||| || ||||| ||||| || || || || | Sbjct 9707 AAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACG 9766 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || ||||||| ||||| Sbjct 9767 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTC 9826 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 9827 ACGAAGATCTGCAT 9840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| | ||| ||| ||||| ||||| || |||| | Sbjct 9191 GACTCTTTCTGGATGTTGTAGTCGGACGGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCA 9250 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || ||||| || ||||| ||||| || || || || | Sbjct 9251 AAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACG 9310 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || ||||||| || || Sbjct 9311 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTC 9370 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 9371 ACGAAGATCTGCAT 9384 >seq139 Length=3560323 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 || ||||| | |||||||||||||||||| || ||||| || ||||||||||| ||| Sbjct 1635798 ACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGATTGCTCTTC 1635739 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || || || | |||||| |||||||||| || Sbjct 1635738 CGGTTACAGGAATCTTTGTAGAGCATGTATGG 1635707 >seq5750 Length=9448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| |||| || | | |||||||| || |||||||||||| || ||| || Sbjct 7868 CAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCG 7927 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||| ||||| || |||| |||| || ||||| || ||||| || ||||| || Sbjct 7928 CCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTC 7987 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || || | | || | || || | ||||| || |||| || Sbjct 7988 TTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGT 8047 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || |||| || || | ||| |||||||| Sbjct 8048 GATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 8086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| || ||| ||| ||||| ||||| || |||| Sbjct 8121 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCG 8180 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || ||||| || ||||| ||||| || || || || | Sbjct 8181 AAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACA 8240 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || ||||||| || || Sbjct 8241 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTC 8300 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 8301 ACGAAGATCTGCAT 8314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| || ||| ||| ||||| ||||| || |||| Sbjct 8577 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCG 8636 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || ||||| || ||||| ||||| || || || || | Sbjct 8637 AAGATCAGCCGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACG 8696 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || || |||| ||||| Sbjct 8697 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTTTTC 8756 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 8757 ACGAAGATCTGCAT 8770 >seq29 Length=10643064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || || ||| ||||| || || || || | | Sbjct 9522407 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGCCCGTCTTCCAGTTGCTTGCCAGCA 9522466 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || |||| Sbjct 9522467 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCACA 9522526 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | || || || || || ||||| Sbjct 9522527 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTC 9522586 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 9522587 ACGAAAATCTGCAT 9522600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476541769663440