Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10 174 2e-38 seq139 127 3e-24 seq115 98.7 1e-15 seq93 87.8 2e-12 >seq10 Length=16450340 Score = 174 bits (192), Expect = 2e-38 Identities = 488/744 (66%), Gaps = 25/744 (3%) Strand=Plus/Minus Query 39309 GTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGC 39368 ||| ||| ||| |||| | || ||||| || || | ||||| || || || || || | Sbjct 11919843 GTGGCATCACTTCCATCCTCTGATATTCGCCCACTCTCTTCTCAAAGAAGTTCGTCTTCC 11919784 Query 39369 CTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTAT--Attttttttt 39426 ||| ||| ||||| |||||||| ||||| ||| | || ||| | || | Sbjct 11919783 TTTCTCGTGAAATATTCTCCATGAAGTCAAATGGACT--TTCTATTCGGAAAACCTTGCT 11919726 Query 39427 AAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTC 39486 ||| || | || | | |||||| | || ||||| ||||| ||||||| Sbjct 11919725 AAAACCCAGCTCCAGCCTGAGTCTATCAGTCACGAATTCAATGTACCCCTTCATCAGAGT 11919666 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 |||||||| | |||| || ||||| | ||||| || || ||||| | || || | Sbjct 11919665 GCAATTCATCGCAATGACATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTATCCC 11919606 Query 39547 TACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTC--GGTGGATGCAATAAATGT 39604 || || | || || ||| | | || |||| | || ||| |||| | ||| Sbjct 11919605 AACAGCGTTGGTGATGATCTCTTTCAC--CCTCTGCTCTGCAGGTTTGTGCAGCAGGTGT 11919548 Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 || ||||| | |||||| ||||| || || | ||||||||||| ||| | | || ||| Sbjct 11919547 TTGAACATCAGGCAGGCAAAGTCTCAGTGCAAACCCTCATCTCTGCTACTCATTTGGTTG 11919488 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || |||| || ||||||| || | | || |||||||| ||||| | |||||||| Sbjct 11919487 GAGAATG--AGGCCAGGCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGCAAAAGA- 11919431 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA 39784 |||| ||||| |||| ||||| || |||| | ||||| || || Sbjct 11919430 ----------AGATTCCTTCCACTGTGGCAAACGCTACAACACGTTCTCCATAGGCGGTC 11919381 Query 39785 TCATTATGT---ATCCACTTCTGTGCCCAATCAG-CTTTCTTCTTTACACAAGGCATTGT 39840 || || | ||||| | ||||| ||| || |||||| |||||||||| || Sbjct 11919380 TCTTTGTTCCTGATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGT 11919321 Query 39841 TTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 || | || || ||||| | | |||| | |||||||| | || || || | Sbjct 11919320 CTCCACGGCGTTGAAGAGCAACTCCCTTTCCTTGGCATCTTTAATGTCAGTGTCAATGAG 11919261 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 ||||| |||||||| |||||||||||||| || || || || || | ||| ||||| | Sbjct 11919260 GAGACTGTACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCG 11919201 Query 39961 TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 ||||| || || || || ||| | ||| | ||| |||| || ||||| || || Sbjct 11919200 GGCTTCGGTGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTCTCATTGGTGATGCC 11919141 Query 40021 ATCACTAGCGGCAAAAAATGCCAA 40044 || || || | || || ||||| Sbjct 11919140 ATGGCTGGCAACTAAGAAGGCCAA 11919117 >seq139 Length=3560323 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || |||||||||||||| || || |||||||| ||||| | || Sbjct 1651053 TGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 1650994 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| |||||||| || ||||| ||||| || || | | |||||| Sbjct 1650993 TCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1650934 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 1650933 TTTCTTATACCAT 1650921 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 1618138 CACCACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 1618079 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 |||| ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 1618078 GAATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTAT 1618019 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 1618018 CTAGTTCCACAGTAGTGACCCCACTGTATAAACCTTGGATTACTTTCATGG 1617968 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 1634482 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 1634423 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | || || ||||||| || Sbjct 1634422 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 1634363 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCG 69743 || || || || || | |||| ||||| Sbjct 1634362 TCCAGGTAAATAGCAAATGCTCCAGGTCG 1634334 >seq115 Length=3908719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 3778542 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCTTT 3778483 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| ||||| ||||| || || || || ||||| || |||||||| || ||||| || Sbjct 3778482 AACCAGAATATAGCAGCGAATGAGCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 3778423 Query 39761 AC 39762 || Sbjct 3778422 AC 3778421 >seq93 Length=4592439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/257 (68%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAA--CCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCA 37404 ||| || || ||||| ||| ||||| ||| | ||| |||| | | ||| ||||| Sbjct 2488804 TCCAGTAGAACCAAAACCCCCTGAGCCCCTTTCAGTGT--CATCCAAAACTTGAACTTCC 2488861 Query 37405 TTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTT 37464 | | || |||||| | || |||| | | || ||||| || |||| || || | ||| Sbjct 2488862 TCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGGTCACCATT-TTT 2488920 Query 37465 ATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCT 37524 | || |||||| ||| ||| ||| | | | || |||| ||| || ||||||||| Sbjct 2488921 ACTTCAAAATTTTCTTTGCCAAAATTAAATAATACAACACCAAGATTTCCTCTATAATCT 2488980 Query 37525 TCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGATCTAGGA 37581 ||||| || || || |||||||||| ||| |||| || ||| | || | ||| Sbjct 2488981 TCATCTATAACACCAGCTCCTACATCTATAAAGTGTTTTGCAGCCAAGCTGGAACGTGGA 2489040 Query 37582 GCTATTCTTCCATAACA 37598 ||| ||||||||| || Sbjct 2489041 GCTCCTCTTCCATAGCA 2489057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686808734560560