Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq18 127 2e-24 seq51 116 3e-21 seq10 116 3e-21 seq115 102 6e-17 seq100 86.0 5e-12 >seq18 Length=14577598 Score = 127 bits (140), Expect = 2e-24 Identities = 201/286 (70%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 19501 TTTGCTGACGCTGAAGAAGAACAAAA-ACGTTTAGGGCGCAAAAGTTCTTTGCACATTAT 19559 |||||||| |||||||| || |||| | | || | || || ||| ||||||||| || Sbjct 7327009 TTTGCTGATGCTGAAGAGGAGCAAAGGAAGCTTGGTGCT-AACAGTGGTTTGCACATCAT 7326951 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CTGGTGTAAATGG 19613 || | |||||| | || || ||||| ||||| ||||| ||||| | || Sbjct 7326950 CATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGCTGGTAGCACAGG 7326891 Query 19614 AGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAA 19673 ||| ||||||||||| ||||| ||| | ||||| ||| | ||||| || | || ||||| Sbjct 7326890 AGTCCATGACACTGTCGTCAACCAATTGCTGTCCAAAATTGACGGGGTAGAACAGCTGAA 7326831 Query 19674 TAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACG 19733 || || ||||| ||||| ||||| || |||| || | ||||| || | | || Sbjct 7326830 CAACATCTTAGTCATTGGAATGACCAACAGACCAGATCTGATAGATGAAGCTCTCCTTCG 7326771 Query 19734 ACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 ||| || | ||||| | || || ||||| |||||| |||||| Sbjct 7326770 ACCTGGAAGACTGGAAGTTAAAATGGAAATAGGCTTACCAGATGAA 7326725 >seq51 Length=7355605 Score = 116 bits (128), Expect = 3e-21 Identities = 281/424 (66%), Gaps = 1/424 (0%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | ||||| |||||| | |||| || || || ||| Sbjct 6071428 GTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGGAAACTTGTATT-CTTGGTTTGGAC 6071370 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAAC 47335 |||||||| ||||| | | || |||||||||||| | | | || | ||| Sbjct 6071369 AATGCAGGCAAAACCACTCTTCTACACATGCTCAAAGATGACAGATTGGGCCAACATGTT 6071310 Query 47336 CCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTT 47395 || |||||||||||||| || ||| | || ||||||||||| || || |||| || ||| Sbjct 6071309 CCAACATTACATCCGACATCAGAAGAGCTGACAATTGCTGGAATGACTTTTACAACTTTT 6071250 Query 47396 GATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGAT 47455 || | || || || ||||| ||| | | ||| |||||||| | | | || || Sbjct 6071249 GACCTTGGTGGGCATGAGCAAGCACGTCGGGTTTGGAAAAATTATCTCCCAGCAATTAAT 6071190 Query 47456 GCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAATCGAA 47515 | || || | | | || || ||||||||| || || | || | ||| | ||| Sbjct 6071189 GGGATTGTCTTTCTGGTGGATTGTGCAGATCATCCTCACCTCATGGAATCCAAAGTTGAA 6071130 Query 47516 TTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGGCAAT 47575 | |||| || | | || ||| || | |||| || ||||| | ||||| || Sbjct 6071129 CTTAATGCTTTAATGACTGACGAAACAATATTCAATGTGCCAATTTTTATCTTGGGTAAC 6071070 Query 47576 AAAATCGACAAACAAAACGCGATAGGAGAAGTTGAACTTCGCCATATATTTGGAATATAC 47635 ||||| |||| | | | || || | |||| |||| || | |||||||| | || Sbjct 6071069 AAAATTGACAGAGCAGATGCAATTAGTGAAGACAAACTCCGTGAGATATTTGGGCTTTAT 6071010 Query 47636 GGAC 47639 |||| Sbjct 6071009 GGAC 6071006 >seq10 Length=16450340 Score = 116 bits (128), Expect = 3e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 43852 TTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGC 43911 |||||| || || | ||| ||| | || || |||||| || ||||| |||||| Sbjct 11919116 TTTGGCCTTCTTAGTTGCCAGCCATGGCATCACCAATGAGAACTTGGTGGAGCGGTTTAG 11919175 Query 43912 GCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970 ||||||||||| || ||| ||||| || ||||| || | || ||||||||||| |||| Sbjct 11919176 CCAAGAAGTTCAGATCACC-GAAGCCCGCTGTTTCTACAGCTTCCAAATTGCCATGGAAA 11919234 Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 | || ||||| |||||||||||||| || || || || |||| ||||||| Sbjct 11919235 ACATCCATTCTGAAATGTACAGTCTCCTCATTGACACTGACATTAAAGATG 11919285 >seq115 Length=3908719 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| ||||| |||||||| ||||| || || || || ||||| ||| Sbjct 3778421 GTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGCTCATTCGCTGCTATATTCTGG 3778480 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 ||||||||| ||||| |||||||||| | || ||||| ||||| | || || | ||| Sbjct 3778481 TTAAAGAAAAGAGGTCTGATGCCTGGACTCACCTTTTCCAATGAACTCATCAGCAGAGAT 3778540 Query 44255 GAAG 44258 |||| Sbjct 3778541 GAAG 3778544 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 3788488 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 3788547 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 3788548 AACGAGTTTCAGAGTATCAGCG 3788569 >seq100 Length=4366265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 1679159 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 1679218 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| ||| | ||||| ||| | Sbjct 1679219 AGCATGGCTGGTAGCACAGGAGTCCATGACACTGTCGTCAACCAATTGCTGTCCAAAATT 1679278 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 1679279 GATGGGGTAGAACAGCTGAACAACATCTTAGTCATTGGTATG 1679320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397399548082270