Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq10901 158 4e-34 seq540 143 1e-29 seq18 141 3e-29 seq3020 136 1e-27 seq17 134 5e-27 >seq10901 Length=5475 Score = 158 bits (174), Expect = 4e-34 Identities = 135/160 (84%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 22192 CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC 22251 ||||| ||||||||||||||||| ||||||| ||||||||||||||| | ||| | |||| Sbjct 157 CCATCGCAAACGGCATGATGAACTTGAATCGACAGCGGCATCAGCACGTCGTCACTTTGC 98 Query 22252 GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC-GTT 22310 ||||| |||||| |||| |||| |||||||||||||||||||| | | || || ||| Sbjct 97 ATATAA-GTTTGCCTATGGGGAAACTGGGGGCGAAGAAGTTGTCCAGA-TCGCGACTGTT 40 Query 22311 TAAATCAAAACTGGTGAAACTCA-CCCAGGGATTGGCTGA 22349 |||||| ||||||||||| ||| || |||||||||||| Sbjct 39 TAAATC-GAACTGGTGAAAGTCATGCCCGGGATTGGCTGA 1 >seq540 Length=559581 Score = 143 bits (158), Expect = 1e-29 Identities = 151/195 (77%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 22437 AAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC 22496 |||| ||||||||||||||||| ||| ||||||||| | ||||| |||| ||| | Sbjct 316785 AAACACCCGGAAATCGTCGTGGTCTTCTACCCAGAGCGACGGGAACGTGTCAGGTTGGTA 316726 Query 22497 ATGGAAAAC-GGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCA 22555 |||| || || ||||| | | |||| ||||||||||| | ||| ||||||||||| Sbjct 316725 GTGGAGAAGAGGGGTAACCACCGAGAACTCTATCCCATATGAGCAGGGCACCGTCTTTCT 316666 Query 22556 TTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCG 22615 ||||||||||||| || || |||| |||||| | ||| |||| ||| |||| | || Sbjct 316665 TTGCCATACGGAACGTCGAATAAGCAATCATCA-GTTGGCCAGAAGGTG-ATAAGAGACG 316608 Query 22616 GATAAAACTTGTGCT 22630 || |||||||||||| Sbjct 316607 GAAAAAACTTGTGCT 316593 >seq18 Length=14577598 Score = 141 bits (156), Expect = 3e-29 Identities = 144/179 (80%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 22546 CCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGA 22605 || |||||| | ||| | ||| | || | | | | |||| ||||||| || |||||||| Sbjct 13354918 CCTTCTTTCCT-GCCTTCCGGCACCCCTGCTTACCTTTCACCAGGCGGCCA-GAATGTGA 13354861 Query 22606 ATAAA-GGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAA- 22663 ||||| | ||||| |||||||||| || |||||||||| |||||||| | ||||||| Sbjct 13354860 ATAAACGTCCGGA-CAAACTTGTGCACATCTTTCTTTACGCTCTTTAAAGATGCCGTAAC 13354802 Query 22664 TATCCAGCTGAACGGTCTGG-TTATAGGTACATTGAGCAACTGACTGAAATGCCTCAAA 22721 ||| ||||||||||||||| ||||| || |||||||| ||||||| ||||||||||| Sbjct 13354801 TAT--AGCTGAACGGTCTGGATTATATGTCCATTGAGCGACTGACTCGAATGCCTCAAA 13354745 >seq3020 Length=18561 Score = 136 bits (150), Expect = 1e-27 Identities = 166/219 (76%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 22213 ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG 22272 |||||||||||||||| | ||||| | ||| ||| ||||||| ||| ||||| || Sbjct 18348 ACCTGAATCGCCAGCGTTAGG-GCACCCTTTCGGCTTACGTATAAGATTAGCCCAAGGGT 18406 Query 22273 AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT--TTAAATCAAAACTGGTGAAAC 22330 || |||| | ||||| | | ||||| ||||||| || | ||| ||| ||| || Sbjct 18407 AAGACGGAGCCGAAGCGTTAGCCCATAC-GGCCACGCGGTTGACTCAGGACTAGTGTTAC 18465 Query 22331 TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG 22390 || | ||||||||| |||||| | ||||||||||||||||| |||||||| ||||| | Sbjct 18466 TCCCAGAGGGATTGGTTGAGAC-AGAAACATATTCTCAATAACCCCTTTAGTGAAATCTG 18524 Query 22391 CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATA 22429 | || ||| ||| ||||||||||||||| |||||| Sbjct 18525 GCGGGGATTC-CCGGGGCACGCCACATCTTGC-AATATA 18561 >seq17 Length=15202523 Score = 134 bits (148), Expect = 5e-27 Identities = 203/279 (73%), Gaps = 15/279 (5%) Strand=Plus/Plus Query 22349 AGACGAAAAACATATTCT--CAATAAACCCTTTAGGGAAA----TAGGCCAGGTTTTCAC 22402 || ||||| | |||||| ||||| ||||||||||||| || |||| | | Sbjct 8741263 AGCCGAAAGAGATATTCCACCAATAC-CCCTTTAGGGAAAATCTTA--CCAGATCTCTGT 8741319 Query 22403 CGTAACAC--GCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTA 22460 |||||||| || | || ||||||||||||| | | ||||||||||||||| ||||| Sbjct 8741320 CGTAACACTTGCGTTTTATT-CGAATATATGTGTCGGACCTGCCGGAAATCGTCCTGGTA 8741378 Query 22461 TTCACTCCAGAG-CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGT 22519 || ||| ||||| |||||||| ||||||| || |||| || | | | ||||||| Sbjct 8741379 TTAACTTCAGAGACGATGAAAGGATTTCAGTATGTTCATAGACAGGGCAATCCCAAGGGT 8741438 Query 22520 GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAG 22579 || | ||| ||| || |||||||||| || ||||| ||||| | ||||||||| Sbjct 8741439 GAGCTATAT-TCATTTCCCCAGCTCACCACCTCTCATTAGAGTACGGTA-TCCGGATGAC 8741496 Query 22580 CATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGAT 22618 | | || |||||||||| | ||||||||| ||||| Sbjct 8741497 CCCAAAATAGACGGGCAAGAAAGGGAATAAAGGACGGAT 8741535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184419274453572