Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq402 147 2e-30 seq1 82.4 6e-11 >seq402 Length=911058 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 128709 AGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 128650 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || ||||||||||| | ||||||||||| ||||| || || ||||| |||| | Sbjct 128649 ACACCTAGCCCCATGTCGGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 128590 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| ||||| || | ||| ||||| ||||| || ||||| Sbjct 128589 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGGGCCAT 128549 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || |||||||||||||| || || || || || || | || Sbjct 126301 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACGGGGCCTAAATC 126242 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| |||| ||| ||| ||| ||||||| ||||| | ||| || |||||||| Sbjct 126241 TCCTTCTTTTCTGCTGGAGAATCCCAGGTTGTCCAGGAAGTCACGGGACCCATTGGCGTC 126182 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| | || ||||| || || ||||| | |||||||| || Sbjct 126181 CCAGATTCTCACTCCCTTGGACGACAGTTCTTTAGCATTTGTGGATCC 126134 >seq1 Length=64990205 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || |||||||| | | ||| | |||||| | ||| Sbjct 35302698 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGATTCTTCTTGGGA 35302639 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCT 110500 ||||||||||| ||||| |||||||| ||||||| |||| Sbjct 35302638 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCT 35302599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406252690464168