Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq138 250 2e-61 seq30 143 2e-29 seq1364 140 3e-28 seq37 113 4e-20 seq402 100 2e-16 >seq138 Length=3617779 Score = 250 bits (276), Expect = 2e-61 Identities = 253/324 (78%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 1209 GTTGTAACCCAGGATGAAGCAACACCACTTGGAGACCCC-GTTTCTATTAAG-TGTTTTT 1266 || || ||||| |||||| |||| | || | || || | |||| ||| | || || Sbjct 2232248 GTGGTGACCCAAGATGAAA-AACAGCCGCTGAACACACCTGCTTCT-TTACGATGCTTCC 2232305 Query 1267 TAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAG 1326 | ||||| || || ||||| || ||||| |||||||| ||| | || || |||||||||| Sbjct 2232306 TGGAAACTCCCCAGGAAGTCGTTATTGTGACATGGCAGAAAATGAAGGCTTCAAGCCCAG 2232365 Query 1327 AAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATA 1386 ||||||||| |||||| || || || || ||||| || || || || || || || |||| Sbjct 2232366 AAAACATGGTCACTTTCAGCAAGGAGCATGGGGTCGTGGTCCAACCCGCCTATAAGGATA 2232425 Query 1387 AAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACAT 1446 | ||||||||||||||||| ||||| || |||||||| || ||||||||||| || || Sbjct 2232426 AGATGAACATAACTGAGCTGGGACTTCAGAACACAACCATCACCTTCTGGAATACCACTC 2232485 Query 1447 TGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAG 1506 |||| ||||||||||| ||||||||| | || || || || || || ||||||||||||| Sbjct 2232486 TGGACGATGAAGGGTGTTACAAGTGTCTCTTCAATACCTTCGGTTCCGGGAAGATGTCAG 2232545 Query 1507 GAATAGGGTGTCTAACCCTTTTTG 1530 |||||| || || ||||| |||| Sbjct 2232546 GAATAGCCTGCCTCACCCTCTTTG 2232569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1553 CTATGAGTTATCTGAAGGAAGCTTAAATGTTACGTGCTCTGCAAATGCCCGCCCAGTACC 1612 |||| | ||||| |||| | ||||||| || |||||||| ||||||||||||| || Sbjct 2234800 CTATAAATTATCCGAAGACCACCTAAATGTCACTTGCTCTGCCAATGCCCGCCCAGCCCC 2234859 Query 1613 AACAATGGTATGGAATTTTAATGATACAGACAGCTACAATAATACTGAAATTATAACCCA 1672 |||| ||||| | || ||| | |||| | |||||| ||||| || || Sbjct 2234860 TGCAATCTCCTGGAAGGTCGCTGGGTCAGGAATGGACAACAGTACTGAGATTATCACACA 2234919 Query 1673 CCCCAATGGAACAACATCTATTGTCAGTGTTCTCTACATCAGAGATCCAAAAAA 1726 | ||||||| || || ||| | |||| || ||| |||||| ||| || || || Sbjct 2234920 CTCCAATGGGACCACGTCTGTCATCAGCGTCCTCCACATCAAAGACCCCAAGAA 2234973 >seq30 Length=9872594 Score = 143 bits (158), Expect = 2e-29 Identities = 370/561 (66%), Gaps = 46/561 (8%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||| | || | || |||||||| | || || ||| | ||||| Sbjct 1731208 CTAAACTGCATCATTGCTATGTCCCAGAACATGGGCATCAGCAAGAATGGAGACCTGCCT 1731267 Query 2200 TGGCCTC--CTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCA 2254 ||||| | | || | ||||||||| || |||| |||| |||||| | | ||||| Sbjct 1731268 TGGCCCCTACACTCAGAAATGAATTCAAGTATTTCCAAAGAATGACCACAACCTCTTCAG 1731327 Query 2255 CTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTA 2314 | || ||||||||| | ||| || ||||| ||||| || ||||| | Sbjct 1731328 CAGAAGGTAAACAGAATTT---------GGGTAGGAAGACCTGGTTCTCCATTCCCG--A 1731376 Query 2315 AAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCC 2372 ||| | ||||||| | |||| || ||| | |||||||||||| |||| | || Sbjct 1731377 GAAGTATTGGCCTTTACATGACAGGATTAATTTAGTTCTCAGTAGA-ACCTCTGAAAG-- 1731433 Query 2373 ACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGG 2432 | ||||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 1731434 --------GAGCTCATTTTCTTGCCAAAAGTTTGGATGATGCCTTAAAACTTATTGAGGA 1731485 Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 ||||||||||| | | | ||||| | | ||||||| | || || || | ||| ||| | Sbjct 1731486 ACCAGAATTAACAAATAAAGTGGACATGGCTTGGATAGTGGGAGGCAGTTTTGTTTATAA 1731545 Query 2493 GGAGAGCATTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 ||| ||| | |||| | | || | || | | ||||| |||||||| |||| Sbjct 1731546 GGAAGCCATGAACAAGCT-TGGCCATCATAGATTCTTTTTGACAAGGATGATGCAG---- 1731600 Query 2552 TTGAATGTGATACATACTT---CCCAGAAATTAATCTTACCAAATACAAACAACTTACTG 2608 ||||||| || |||||||||| || | ||||| |||| || | | Sbjct 1731601 --------GATACATTTTTTTCCCCAGAAATTGATTTGGAGAAATATAAACTTCTCCCAG 1731652 Query 2609 AATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGA 2668 | | ||||||||||| |||| || || || ||||| || |||| ||||||| ||| Sbjct 1731653 AGTATCCAGGTGTTCTTTCTGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATATGAAG 1731712 Query 2669 TATATGaaaaaaaaaCATAAT 2689 |||||||||| || ||||| Sbjct 1731713 TATATGAAAAGAATGAATAAT 1731733 >seq1364 Length=78148 Score = 140 bits (154), Expect = 3e-28 Identities = 353/534 (66%), Gaps = 42/534 (8%) Strand=Plus/Minus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||||||| | || || ||| | ||||| ||||| || || | | Sbjct 66394 GCTGTGTCCCAGAACATGGGCATCAGCAAGAATGGAGACCTGCCTTGGCCCCCACTCAGA 66335 Query 2215 AATGAATTTAAACATTTTCAAAAAATGA---CATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || |||| |||| ||||| || | ||||| | || ||||||||| Sbjct 66334 AATGAATTCAAGTATTTCCAAAGAATGATCACAACCTCTTCAGCAGAAGGTAAACAGAAT 66275 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGA 2329 | ||| || ||||| ||||| || ||||| | ||| | ||||||| Sbjct 66274 TT---------GGGTAGGAAGACCTGGTTCTCCATTCCCG--AGAAGTATTGGCCTTTAC 66226 Query 2330 ACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 | |||| || ||| | |||| ||||||| |||| | || | ||||| | Sbjct 66225 ATGACAGGATTAATTTAGTTCGCAGTAGA-ACCTCTGAAAG----------GAGCTCATT 66177 Query 2390 TTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACA 2449 || |||| |||||| | ||| | || | || | || | ||||||||||| | | | Sbjct 66176 TTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTCATTGAGGAACCAGAATTAACAAATA 66117 Query 2450 GGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGA 2508 ||||| | | ||||||| | || || || | ||| ||| |||| ||| | |||| Sbjct 66116 AAGTGGACATGGCTTGGATAGTGGGAGGCAGTTTTGTTTATAAGGAAGCCATGAACAAGC 66057 Query 2509 TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATAC 2568 | | || | || | | ||||| |||||||| |||| ||||||| Sbjct 66056 T-TGGCCATCATAGATTCTTTTTGACAAGGATGATGCAG------------GATACATTT 66010 Query 2569 TTC-CCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTC 2627 || ||||||||| || | ||||| |||| || | || | ||||||||||| || Sbjct 66009 TTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTCCCAGAGTATCCAGGTGTTCTTTC 65950 Query 2628 TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || || || ||||| || |||| ||||||| ||| |||||||||| || Sbjct 65949 TGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATATGAAGTATATGAAAAGAA 65896 >seq37 Length=8612855 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || |||||||| | ||||| || ||||||||| Sbjct 6023396 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGAAGGATTGTGGCCTTCTTTGAG 6023337 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 6023336 TTCGGTGGAGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 6023277 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||||||| Sbjct 6023276 ATCGCCCTGTGGATGACAGA 6023257 >seq402 Length=911058 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 128709 AGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 128650 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || |||||||| ||||| |||||||||| ||||| || ||||| ||||| | Sbjct 128649 ACACCTAGCCCCATGTCGGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 128590 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAA 118698 || || ||||| | | | || ||||||||||| |||| ||| Sbjct 128589 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGGGCCATCGAA 128545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414417930564856