Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20lucifugus_20[refseq_20GCF_5F000147115.1_202010-09-14] 11,654 sequences; 2,034,575,300 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9012 118 9e-22 seq93 113 4e-20 seq10 100 2e-16 seq115 86.0 5e-12 >seq9012 Length=6576 Score = 118 bits (130), Expect = 9e-22 Identities = 123/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| || ||||| || || | ||||| |||||||| ||| || |||||| | || Sbjct 5005 AAAACTGACATTCAGATAGCTCTTCCTTCTGGGTGCTATGGAAGAGGAGCTCCACGTTCC 4946 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 | ||||| | ||||||||||| ||||| || || |||||||||||| ||| |||||| Sbjct 4945 AGCTTGGCTGCAAAACACTTTATAGACGTAGGAGCTGGTGTTATAGATGAAGATTATAGA 4886 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||||| |||| |||| | ||||||||||| |||||| Sbjct 4885 GGAAATCTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAA 4845 >seq93 Length=4592439 Score = 113 bits (124), Expect = 4e-20 Identities = 122/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| || ||||| | || | ||||| |||||||| ||| || |||||| | || Sbjct 2489090 AAAACTGACATTCAGACAGCTCTTCCTTCTGGGTGCTATGGAAGAGGAGCTCCACGTTCC 2489031 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 | ||||| | ||||||||||| || || || || |||||||||||| ||| |||||| Sbjct 2489030 AGCTTGGCTGCAAAACACTTTATAGATGTAGGAGCTGGTGTTATAGATGAAGATTATAGA 2488971 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||||| |||| |||| || ||||||||||| |||||| Sbjct 2488970 GGAAATCTTGGTGTTGTATTATTTAATTTTGGCAAAGAAAA 2488930 >seq10 Length=16450340 Score = 100 bits (110), Expect = 2e-16 Identities = 286/437 (65%), Gaps = 22/437 (5%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| || || |||||||| || ||||||||| ||| || ||| || || | | Sbjct 11919535 CAGGCAAAGTCTCAGTGCAAACCCTCATCTCTGCTACTCATTTGGTTGGAGAATG--AGG 11919478 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || |||| | ||| || || ||||| ||||| | ||||| |||| Sbjct 11919477 CCAGGCACCAGGTCTCATTTCTTGAGCCAGAATATCGGCGCAAA-----------AGAAG 11919429 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || ||||| || | |||||||||||| | || || | | | | |||||| | Sbjct 11919428 ATTCCTTCCACTGTGGCAAACGCTACAACACGTTCTCCATAGGCGGTCTCTTTGTTCCTG 11919369 Query 4728 ATCCATTTTAATGCCCAGTTAG-CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| || |||||| || || ||||| | || || || || | | ||||| Sbjct 11919368 ATCCAACGCAAGGCCCAGCCAGGCTGCCTTCTTGGCACAAGGCATCGTCTCCACGGCGTT 11919309 Query 4787 AAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || | | | |||| | ||| |||| ||| | |||||| || || || || | Sbjct 11919308 GAAGAGCAACTCCCTTTCCT----TGGCATCTTTAATGTCAGTGTCAATGAGGAGACTGT 11919253 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 ||||||||||||| || ||||| || ||||| || || | ||| || || | ||||| | Sbjct 11919252 ACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCTGTAGAAACAGCGGGCTTCGG 11919193 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | | |||||||| | | ||| | || || ||||| || || || || | |||| Sbjct 11919192 TGATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTCTCATTGGTGATGCCATGGCTGG 11919133 Query 4963 CTGCAAAAAACGCCAAA 4979 | | || || |||||| Sbjct 11919132 CAACTAAGAAGGCCAAA 11919116 >seq115 Length=3908719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 3788566 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 3788507 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 3788506 ATAAAATCAAAGGGATT 3788490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || ||||| || ||||||||||||||||| || || | Sbjct 3773499 AAAATCTT---ACCAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAGGCTAAGA 3773443 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| || || | ||||| || | |||||| || | ||| || | Sbjct 3773442 TGTGGGAGATAAAATACTTCTCATCTGATTTAAGCTTGTGCCAGTGTGGGAGATCCTTTG 3773383 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 3773382 ATAAGTCAAC 3773373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426988944810782