Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7767 210 2e-49 seq7842 84.2 2e-11 >seq7767 Length=50048226 Score = 210 bits (232), Expect = 2e-49 Identities = 596/906 (66%), Gaps = 20/906 (2%) Strand=Plus/Minus Query 16629 CATCCAATGAAAATGTGTTATCTTGTTTATGA-ACAACACCCATTCTTTGGTAATCGCTA 16687 ||||||| | ||| | || | ||| | ||| | || ||||| || || || || | Sbjct 16036790 CATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCT 16036731 Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || | || || || ||||| | || || || || |||||||||||||| ||||| Sbjct 16036730 ACTCTCTTCTCAAAGAAGTT-----TCCCTTCCAGTGAAATATTCTCCATGAAGTCAAAT 16036676 Query 16748 GGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 ||||| || ||||||| || | | || || || || | || | || | Sbjct 16036675 GGATTTTCTACTCTGAAAACCTTGCCAA--AACCTAGCTCCAGCATAAGTCGGTGTGCCA 16036618 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 |||| || ||| | || |||||| ||| ||||| || || || | || | | Sbjct 16036617 CAAACTCAATACACTGCTTCATTAACGTGCAATTCATCCCAATGAGCTTCAGGGGCAAGG 16036558 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA---ACTC 16922 ||||| | || | |||||||| ||| || | ||||||| | | |||| Sbjct 16036557 TCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT---TAATAATTATTTCCTTCACTC 16036501 Query 16923 GTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTA 16982 | || ||| ||| | || || ||||| |||||||| || || || || || |||| Sbjct 16036500 TCTGCTTGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTA 16036441 Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 | ||||| |||||||| |||||||| || ||||| | || |||||| | |||| Sbjct 16036440 AACCCTCATCTCTGCTAATAAGTTCATTGGAAAACATGGGGCCAGGCATCAGGTCACGTT 16036381 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | ||| ||||||| || || || ||||||||||| || || || || | |||| Sbjct 16036380 TCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAA 16036321 Query 17103 ACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACT 17162 | | | | ||||| |||| || || ||||||| | | |||| | | |||| | Sbjct 16036320 AGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAGT 16036261 Query 17163 CGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTC 17220 | || || | ||||| ||| ||| || || | ||| || | | || ||| |||| | Sbjct 16036260 CTGCCTTCTTCTTTACACAAGGCATTGTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCT- 16036202 Query 17221 CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280 || | || | | ||| || || ||||| || |||||||| || || || ||||| || Sbjct 16036201 TTGGA-ATCTTTAACATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTC 16036143 Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA 17340 |||||| || | || || || || || |||||||| | || |||||||| | || Sbjct 16036142 CATGGCAATTCGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAA 16036083 Query 17341 TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATG 17400 || ||| | | ||||| || || ||||| || |||| || || || |||| | || Sbjct 16036082 CCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCGCAAAGAAAGCCAGAACGTG 16036023 Query 17401 CTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATAT 17460 | || ||| | || || || | || | || || | || ||||| | Sbjct 16036022 GGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAG 16035963 Query 17461 ATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 |||||| ||||| | |||||||| |||| | || || | |||||| | ||||||||| Sbjct 16035962 ATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATC 16035903 Query 17521 ATTGTA 17526 || ||| Sbjct 16035902 ATGGTA 16035897 >seq7842 Length=42459490 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || ||||| || | || |||||| || ||||||| Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 17106 C 17106 | Sbjct 7548345 C 7548345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517494673512960