Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7767 226 3e-54 seq7820 145 8e-30 seq7786 111 2e-19 >seq7767 Length=50048226 Score = 226 bits (250), Expect = 3e-54 Identities = 401/583 (69%), Gaps = 4/583 (1%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| ||||| || || || ||||| || |||| || || |||||||| |||||| Sbjct 16036477 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 16036418 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| | || ||||| | |||||||| | ||||||||||| ||| Sbjct 16036417 TCATTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCA 16036358 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || |||| ||||| | | | |||||| |||| Sbjct 16036357 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAG 16036298 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||||| | | | |||| | | |||| || || || | |||| |||| | Sbjct 16036297 GTAGCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGC 16036238 Query 16424 ATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 || || || | ||| || | | || ||| |||| | || ||| | | ||| || | Sbjct 16036237 ATTGTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAACATAAGTGT 16036180 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 |||| || | ||||||||| || || || ||||| || ||||| || | || ||||||| Sbjct 16036179 CAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGA 16036120 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || || || | || || ||||| | ||| || ||| ||| ||| ||||| | Sbjct 16036119 AACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTA 16036060 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG 16661 | || || ||||| | ||||| || |||| | ||| | || ||| | || |||| Sbjct 16036059 CTATGCCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAG 16036000 Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 | || | | | | | || ||||| | |||||| ||||| | ||||||| Sbjct 16035999 GCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAA 16035940 Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 || |||| | || || | |||||| | ||||||||||| ||| Sbjct 16035939 AGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTA 16035897 >seq7820 Length=31847680 Score = 145 bits (160), Expect = 8e-30 Identities = 560/865 (65%), Gaps = 21/865 (2%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| || || || | || ||||| ||| ||| ||||| ||||| Sbjct 14843923 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATGGATTT 14843864 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAAT 16048 || ||| ||| ||| | || |||||| || |||| || ||||| | ||| Sbjct 14843863 TCTACTCTGGAAAC--CTTGCTAAAACCTAGTTCC-TACCTAAGTCAGTCTGCCATGAAT 14843807 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGG--AAGAGCTT 16106 || ||||| || | ||| ||| || || || || || | | ||| ||| || | Sbjct 14843806 TCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAG-CTTCGCGGGCAAG-GCCT 14843749 Query 16107 TTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTT 16166 || | || | || |||||| ||| || | |||| || || | ||| | Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCATTGATAATTATTTCCTTCACTCTCTGCT 14843689 Query 16167 CAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTT 16226 | || ||| ||||| |||||||| ||||| || || || |||| | |||| || | Sbjct 14843688 CTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCT 14843629 Query 16227 CGTCTCTGCTGATAAGTTCGTTGGAAAAA-GTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 | |||||||| ||||| || |||||||| | | || ||||| | | |||||| Sbjct 14843628 CATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTG 14843569 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||||| ||| | || || ||||| | || || || | ||||| | Sbjct 14843568 AGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCC 14843509 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | |||| |||| ||||| ||||| | | || ||| | |||| || || Sbjct 14843508 ACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCC 14843449 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAA 16463 || | || |||| ||| || || |||| || | | || |||| | | | || Sbjct 14843448 TTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGA- 14843390 Query 16464 TATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGG 16523 ||| | ||||| || ||| | || | ||| |||| || || || ||||| || |||| Sbjct 14843389 -ATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGG 14843331 Query 16524 CTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTT 16583 | || || || |||||||| || | || || | || | ||||| | | | || | Sbjct 14843330 CAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCT 14843271 Query 16584 CCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG--CTT 16641 || ||| ||| ||||| || || || |||| || ||||| || |||| ||||| | | Sbjct 14843270 CCACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGT 14843211 Query 16642 ----AATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATA 16697 || |||| | | || |||| | || | ||| | || | || ||||| | Sbjct 14843210 GGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAA 14843151 Query 16698 TATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATAT 16757 || ||| ||||| | ||||||||| |||| | || || ||| | || | ||||| || Sbjct 14843150 GATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACATATCTGCCAAAGAT 14843091 Query 16758 CATTGTATTGTATGGGAAATACGAC 16782 ||| ||| | || || || | ||| Sbjct 14843090 CATGGTACTTCATAGGGAAGATGAC 14843066 >seq7786 Length=83011774 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | || ||||| |||| ||||| Sbjct 48121150 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 48121209 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||||| Sbjct 48121210 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 48121269 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 48121270 CCACCACTCTTTCC 48121283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511364076823040