Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq7767 226 3e-54
seq7820 145 8e-30
seq7786 111 2e-19
>seq7767
Length=50048226
Score = 226 bits (250), Expect = 3e-54
Identities = 401/583 (69%), Gaps = 4/583 (1%)
Strand=Plus/Minus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
|||||||| ||||| || || || ||||| || |||| || || |||||||| ||||||
Sbjct 16036477 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGT 16036418
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| |||||||| | || ||||| | |||||||| | ||||||||||| |||
Sbjct 16036417 TCATTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCA 16036358
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363
|| || || |||||||| || || || |||| ||||| | | | |||||| ||||
Sbjct 16036357 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAG 16036298
Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423
||||| ||||| | | | |||| | | |||| || || || | |||| |||| |
Sbjct 16036297 GTAGCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGC 16036238
Query 16424 ATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481
|| || || | ||| || | | || ||| |||| | || ||| | | ||| || |
Sbjct 16036237 ATTGTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAACATAAGTGT 16036180
Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541
|||| || | ||||||||| || || || ||||| || ||||| || | || |||||||
Sbjct 16036179 CAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGA 16036120
Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601
| || || || || | || || ||||| | ||| || ||| ||| ||| ||||| |
Sbjct 16036119 AACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTA 16036060
Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG 16661
| || || ||||| | ||||| || |||| | ||| | || ||| | || ||||
Sbjct 16036059 CTATGCCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAG 16036000
Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721
| || | | | | | || ||||| | |||||| ||||| | |||||||
Sbjct 16035999 GCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAA 16035940
Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764
|| |||| | || || | |||||| | ||||||||||| |||
Sbjct 16035939 AGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTA 16035897
>seq7820
Length=31847680
Score = 145 bits (160), Expect = 8e-30
Identities = 560/865 (65%), Gaps = 21/865 (2%)
Strand=Plus/Minus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || ||||||||||| || || || | || ||||| ||| ||| ||||| |||||
Sbjct 14843923 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATGGATTT 14843864
Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAAT 16048
|| ||| ||| ||| | || |||||| || |||| || ||||| | |||
Sbjct 14843863 TCTACTCTGGAAAC--CTTGCTAAAACCTAGTTCC-TACCTAAGTCAGTCTGCCATGAAT 14843807
Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGG--AAGAGCTT 16106
|| ||||| || | ||| ||| || || || || || | | ||| ||| || |
Sbjct 14843806 TCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAG-CTTCGCGGGCAAG-GCCT 14843749
Query 16107 TTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTT 16166
|| | || | || |||||| ||| || | |||| || || | ||| |
Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCATTGATAATTATTTCCTTCACTCTCTGCT 14843689
Query 16167 CAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTT 16226
| || ||| ||||| |||||||| ||||| || || || |||| | |||| || |
Sbjct 14843688 CTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCT 14843629
Query 16227 CGTCTCTGCTGATAAGTTCGTTGGAAAAA-GTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
| |||||||| ||||| || |||||||| | | || ||||| | | ||||||
Sbjct 14843628 CATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTG 14843569
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||||||||||| ||| | || || ||||| | || || || | ||||| |
Sbjct 14843568 AGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCC 14843509
Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405
| | |||| |||| ||||| ||||| | | || ||| | |||| || ||
Sbjct 14843508 ACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCC 14843449
Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAA 16463
|| | || |||| ||| || || |||| || | | || |||| | | | ||
Sbjct 14843448 TTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGA- 14843390
Query 16464 TATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGG 16523
||| | ||||| || ||| | || | ||| |||| || || || ||||| || ||||
Sbjct 14843389 -ATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGG 14843331
Query 16524 CTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTT 16583
| || || || |||||||| || | || || | || | ||||| | | | || |
Sbjct 14843330 CAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCT 14843271
Query 16584 CCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG--CTT 16641
|| ||| ||| ||||| || || || |||| || ||||| || |||| ||||| | |
Sbjct 14843270 CCACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGT 14843211
Query 16642 ----AATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATA 16697
|| |||| | | || |||| | || | ||| | || | || ||||| |
Sbjct 14843210 GGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAA 14843151
Query 16698 TATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATAT 16757
|| ||| ||||| | ||||||||| |||| | || || ||| | || | ||||| ||
Sbjct 14843150 GATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACATATCTGCCAAAGAT 14843091
Query 16758 CATTGTATTGTATGGGAAATACGAC 16782
||| ||| | || || || | |||
Sbjct 14843090 CATGGTACTTCATAGGGAAGATGAC 14843066
>seq7786
Length=83011774
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| |||||||| || | || ||||| |||| |||||
Sbjct 48121150 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 48121209
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || ||||| ||||| || || || |||| |||||||
Sbjct 48121210 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 48121269
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 48121270 CCACCACTCTTTCC 48121283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511364076823040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |