Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7846 131 1e-25 seq7857 116 3e-21 seq7823 113 4e-20 seq9 109 5e-19 seq7782 86.0 5e-12 >seq7846 Length=12828309 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||||||| || ||||| ||||| | |||||| | ||||| Sbjct 9163024 AGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCC 9163083 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| ||| | ||| || ||||| Sbjct 9163084 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTCC 9163143 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||||| Sbjct 9163144 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 9163203 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || || || || || ||||| Sbjct 9163204 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235 >seq7857 Length=43258702 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || |||||||| || | || || || | || Sbjct 31543688 AGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCT 31543747 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| |||| || ||||||||||| ||| | ||| || || || Sbjct 31543748 TCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 31543807 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| | |||| ||||||| |||| || |||||| Sbjct 31543808 TGGATCTTGGCCTTCACATTTTCGATGATGTCACTGGGCTCCACCTCCAGGGGGATGGTC 31543867 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||||| || || || || || |||||||||| Sbjct 31543868 TTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTGA 31543904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||| ||||| || || || || || || | || || || | || Sbjct 31543459 GAGAACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATC 31543518 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||| ||| |||| ||| | ||||| ||||||||||| ||| | ||| || || | Sbjct 31543519 TTCCATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATA 31543578 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||| || ||||| | | | || |||| ||||||| |||| ||| ||||| Sbjct 31543579 TTGGATATTCGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 31543638 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||||| || || || || || ||||| Sbjct 31543639 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 31543671 >seq7823 Length=12955506 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| || | ||| ||||| || || ||||| || || | | Sbjct 3355549 CCCCTC--AGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAA 3355492 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| ||| |||| || ||||||||||| ||| | Sbjct 3355491 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGA 3355432 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 3355431 TGCCCTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCT 3355372 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 3355371 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3355326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 3355309 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 3355250 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| || || || Sbjct 3355249 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 3355190 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 3355189 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 3355130 Query 21144 TTGCC 21148 ||||| Sbjct 3355129 TTGCC 3355125 >seq9 Length=2205763 Score = 109 bits (120), Expect = 5e-19 Identities = 160/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || || |||||||| | ||| || || | || Sbjct 1749340 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 1749399 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||||||| ||| || | ||||||||| || | ||| |||||||| Sbjct 1749400 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 1749459 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC--CGTTTCCACGGTAATGG 21141 ||| || ||| || | | | || |||| |||||| | || | ||| |||| Sbjct 1749460 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACACCTCAAGGGTGATGG 1749519 Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 ||||||| || | || || ||||| || ||||| | || |||| Sbjct 1749520 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGCATCT 1749563 >seq7782 Length=35566003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| ||| |||||||| | || || | |||||| | ||| || || | | | Sbjct 14262501 GCACCAAGAGCAGGGTGGACTC--TCTGGATATGATAGTCTGACAGAGTACGGCCAGCTT 14262558 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGG 21084 ||||||||||||||||| |||| || | ||||||||| || | | | |||||||| Sbjct 14262559 CCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTT 14262618 Query 21085 CGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCT 21144 ||| || ||| || | | | || |||| |||||| || | ||| ||| ||| Sbjct 14262619 GGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCT 14262678 Query 21145 TGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || | || || ||||| || ||||| Sbjct 14262679 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 14262709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422218688452352