Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq7767 93.3 3e-14 seq7858 87.8 1e-12 seq7828 82.4 6e-11 >seq7767 Length=50048226 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | ||||| | ||||| || ||||| ||| ||| || ||| Sbjct 33066959 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGATCCC 33066900 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || ||| ||||| ||||| | || ||| Sbjct 33066899 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 33066840 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 33066839 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 33066780 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGT 25245 || ||||||||||| ||||||||||| | |||| Sbjct 33066779 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGT 33066746 >seq7858 Length=29646629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25036 TGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAG 25095 |||| || ||| | ||||| | ||||| || ||||| ||| ||| | |||||| | | Sbjct 12424960 TGCAGATTTTCCTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGCCTGAACCCTCGG 12424901 Query 25096 AGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAAC 25155 | || | | || | || || ||| ||||| ||||| | || ||||| | Sbjct 12424900 ATACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGC 12424841 Query 25156 AAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATA 25215 | ||||| ||| |||| ||||| ||| ||||| || ||| || | || ||||| | Sbjct 12424840 AGAGACTGATCGTTGCTGGCAAGCAACTGGAAAATGGATGCACTTTGTCTGACTACAACA 12424781 Query 25216 TTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||| ||||||||||| | ||||| Sbjct 12424780 TTCAAAAGGAGTCTACTCTTCATCTTGTGTT 12424750 >seq7828 Length=21597463 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | ||||| | ||||| || ||||| || ||| |||||| Sbjct 14213589 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 14213530 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || ||| |||| ||||| | || ||| Sbjct 14213529 TCGGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 14213470 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || ||||| |||||||| ||||| ||| |||||||| || || | || ||| Sbjct 14213469 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTCCTTTGTCTGACTAC 14213410 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| || |||||||| | ||||| Sbjct 14213409 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 14213375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410757388155008