Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq7818 102 2e-16 >seq7818 Length=84771923 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | | || ||||| || || |||| |||||| |||||| || || Sbjct 77890200 GGTTCAGTTCCATGTGACCATTGGACACACAGCGCTGTCTCTTTACACAGATTGTCCCTT 77890259 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| |||| | || || |||||||| || ||| Sbjct 77890260 CCCAAAATGGATGCACTGGGCCCTCATTGCCTATGCGATCAGCTTCATATTTCTCTTTCT 77890319 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 77890320 TAACTTCTATGTTCGGACATACAA 77890343 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| |||||| | || || ||||| || || ||||| || || ||| Sbjct 77885893 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACAGTGTTTTTTATCCTGAGG 77885952 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || ||||| ||| || || ||||||||||| | ||| |||||||| | Sbjct 77885953 AAGAAAAACAACCAGGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 77886012 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||||||| | || || || || Sbjct 77886013 TGGTGGATTGGAATTAAATGGGTCGCAGGGGGACA 77886047 Score = 96.9 bits (106), Expect = 6e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| || |||||||| ||||||||| | || ||||| Sbjct 77887633 GCATTTTTTGGAGCACAGCTGAATTCCTTCATCCATGTGATTATGTACTCATACTATGGG 77887692 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | | || | ||| || | ||||| |||||||| ||||||||||| || | || || Sbjct 77887693 TTAACTGCGTTTGGCCCGTGGATTCAG-AAGTATCTTTGGTGGAAACGATACTTGACCAT 77887751 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 77887752 GTTGCAGCTGGT 77887763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923105957434880