Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7857 98.7 1e-15 seq7767 89.7 8e-13 seq7858 84.2 3e-11 >seq7857 Length=43258702 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||||||| || | ||| | ||| || || ||| || | || || || || Sbjct 24178181 CCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAGA 24178123 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||||||| |||||||| ||||| Sbjct 24178122 CAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGG 24178063 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 24178062 AATTCCTTCCTTATCCTG 24178045 >seq7767 Length=50048226 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| | || | ||| | |||||| || ||| || || || || || || Sbjct 33066730 CCACCACGAAGTCTCCACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 33066788 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| ||| |||||||| ||||| Sbjct 33066789 CAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 33066848 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 33066849 AATTCCTTCCTTATCCTG 33066866 >seq7858 Length=29646629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 12424735 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 12424793 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | || || | ||| || ||||||| |||| ||| |||||||| ||||| Sbjct 12424794 CAAAGTGCATCCATTTTCCAGTTGCTTGCCAGCAACGATCAGTCTCTGCTGATCAGGAGG 12424853 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 12424854 AATTCCTTCCTTATCCTG 12424871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743453237002240