Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq7823 113 3e-20
seq7857 100 2e-16
seq9 100 2e-16
seq7846 91.5 1e-13
seq7858 84.2 1e-11
seq7782 82.4 5e-11
>seq7823
Length=12955506
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| |||||||| || || || ||| | ||
Sbjct 3355537 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 3355478
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||||||||| |||||||||| ||||||||| ||| | || ||| || ||
Sbjct 3355477 TCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 3355418
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 3355417 TGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 3355358
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| || || ||||| |||||||||||
Sbjct 3355357 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3355326
Score = 82.4 bits (90), Expect = 5e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || |||||||| |||||||| || ||
Sbjct 3355324 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3355265
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||||||||| || ||||||| ||||||||| |||
Sbjct 3355264 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 3355205
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||| || || ||||| ||| | || | || | || | | || ||
Sbjct 3355204 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 3355145
Query 34343 TCCACCGTGATGGTTTTGCC 34362
|||| |||||||| |||||
Sbjct 3355144 TCCAGGGTGATGGTCTTGCC 3355125
>seq7857
Length=43258702
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||||||| | || |||||||| ||||| || || || || ||| | ||
Sbjct 31543687 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATC 31543746
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| |||||||||||| |||||||||| ||||||||| ||| | || ||| || ||
Sbjct 31543747 TTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 31543806
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | || || | | || || |||| | ||||||
Sbjct 31543807 TTGGATCTTGGCCTTCACATTTTCGATGATGTCACTGGGCTCCACCTCCAGGGGGATGGT 31543866
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| || || ||||| |||||||||||
Sbjct 31543867 CTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 31543899
>seq9
Length=2205763
Score = 100 bits (110), Expect = 2e-16
Identities = 158/220 (72%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || |||||||| || || ||||| ||||| |||| | ||
Sbjct 1749340 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 1749399
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296
|||| ||| ||||| || |||| || ||||||||||| | |||| | || |||||||||
Sbjct 1749400 TCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 1749458
Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG--ACGTCCACCGTGAT 34353
|| ||| ||||| | || | || | || | | ||| || || | |||||
Sbjct 1749459 TTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACACCTCAAGGGTGAT 1749517
Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
||| ||||| || || || |||||||||||||||||| ||
Sbjct 1749518 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 1749557
>seq7846
Length=12828309
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||| ||| | ||| || ||||| ||||||||||| ||||| || ||||
Sbjct 9163023 CAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 9163082
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||| ||| || || || || || | || |||||||||| ||| | || ||| |||||
Sbjct 9163083 CTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTC 9163142
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | | | || | || | | || || |||| ||||||||
Sbjct 9163143 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 9163202
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391
|| ||||| | || ||||| |||||||||||||
Sbjct 9163203 CTTACCGGTCAAGGTCTTCACGAAGATCTGCATCG 9163237
>seq7858
Length=29646629
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| |||||||| || || || ||| | ||
Sbjct 23743191 AGAACCAGGTG-AGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 23743249
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG-TC 34296
|||| |||||||| || || ||||||| || |||||| ||| | || |||||| ||
Sbjct 23743250 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTCCTGGTCAGGGGGGATGCCCTCCTTTATC 23743309
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | || | || | | || || |||| ||||||||
Sbjct 23743310 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 23743369
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || |||| |||||||||||
Sbjct 23743370 CTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 23743402
>seq7782
Length=35566003
Score = 82.4 bits (90), Expect = 5e-11
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
|| |||| || | ||||| ||||| |||| | | |||| ||| ||||| || ||||
Sbjct 14262520 CTCTCTGGATATGATAGTCTGACAGAGTACGGCCAGCTTCCAGCTGTTTGCCCGCAAAAA 14262579
Query 34260 TGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
| || ||||||||||| | |||| | | ||||||||| || ||| ||||| | ||
Sbjct 14262580 TCAGACGCTGCTGGTCAGGCGGG-ATGTCCTCCTTGTCTTGGAT-TTTGGCTTTGACATT 14262637
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | | || || || | |||||| | ||||| || || || |||||
Sbjct 14262638 CTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGCCCGTCAGGGTCTTCAC 14262697
Query 34378 AAAGATCTGCATCGCT 34393
||||||||||||| ||
Sbjct 14262698 AAAGATCTGCATCTCT 14262713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323041004472320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |