Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7767 208 7e-49 seq7786 102 8e-17 >seq7767 Length=50048226 Score = 208 bits (230), Expect = 7e-49 Identities = 583/888 (66%), Gaps = 19/888 (2%) Strand=Plus/Minus Query 15917 TCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAA 15976 ||| || ||||||||| ||| ||| | ||||| |||| |||||||| |||||||| Sbjct 16036772 TCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAG 16036713 Query 15977 TTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAG 16036 ||| ||||| | ||||||||| ||||| || ||||| ||||||| | | | Sbjct 16036712 TTTC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAA 16036658 Query 16037 TATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTC 16096 || | | || | |||| || | || | |||||||| || ||| |||| ||| Sbjct 16036657 ACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTC 16036598 Query 16097 ATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt 16156 ||||| || ||||| || || | || | || | | || || | || | Sbjct 16036597 ATTAACGTGCAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGC 16036538 Query 16157 tCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT--- 16213 ||||| ||| || | ||| ||||| || | ||| | || || ||| ||||| Sbjct 16036537 TCTATCCGAACGGCATTAATAATTATTTCCTTCACT-CTCTGCTT---GGAAGGTTTGTG 16036482 Query 16214 -AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272 | | |||||| ||||| | || ||||| ||||| || || || || || || || || Sbjct 16036481 GACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAAT 16036422 Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 | || || ||||| | | || ||||| || | ||||| || | ||| ||||| | Sbjct 16036421 AAGTTCATTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGT 16036362 Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 ||||| |||||||||||||| || ||||| || || ||||| | || | || || || Sbjct 16036361 CGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCC 16036302 Query 16393 GTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgtttAACA 16450 ||| || || ||| | | | |||| | ||||| | ||| || | || ||| Sbjct 16036301 GTAGGTAGCCTCTTTGTCC--CCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACA 16036244 Query 16451 CAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAA 16510 || ||| |||| | || || || | | | | |||||||| |||| || |||| Sbjct 16036243 CAAGGCATTGTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAA 16036184 Query 16511 GTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCA 16570 || || || || | ||| ||||| || ||||| || || ||||| || || | || ||| Sbjct 16036183 GTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCA 16036124 Query 16571 TAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCG 16630 || || || | ||||| | || || ||||| | ||||| || | |||||||| Sbjct 16036123 TAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCA 16036064 Query 16631 TTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCG 16690 || ||||| ||||| || | ||||| || || || | ||| | ||| | | | || Sbjct 16036063 TTTACTATGCCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCC 16036004 Query 16691 TTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749 | | || | | || | || || || || || | ||| |||||||| | || Sbjct 16036003 TCAGGCTTCAGGGATT-CCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGT 16035945 Query 16750 CCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 |||||| ||||| |||| || | |||||| | ||| || || | ||| Sbjct 16035944 CCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTA 16035897 >seq7786 Length=83011774 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || ||| |||| | Sbjct 48108341 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 48108400 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||| || ||||| || ||||||||||||||||| |||||||| ||||| || | Sbjct 48108401 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 48108460 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 48108461 CCATAAAATCAAAGGGATTTTCTG 48108484 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 48114630 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 48114689 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 48114690 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 48114732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462466488819200