Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq7767 208 7e-49
seq7786 102 8e-17
>seq7767
Length=50048226
Score = 208 bits (230), Expect = 7e-49
Identities = 583/888 (66%), Gaps = 19/888 (2%)
Strand=Plus/Minus
Query 15917 TCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAA 15976
||| || ||||||||| ||| ||| | ||||| |||| |||||||| ||||||||
Sbjct 16036772 TCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAG 16036713
Query 15977 TTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAG 16036
||| ||||| | ||||||||| ||||| || ||||| ||||||| | | |
Sbjct 16036712 TTTC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAA 16036658
Query 16037 TATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTC 16096
|| | | || | |||| || | || | |||||||| || ||| |||| |||
Sbjct 16036657 ACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTC 16036598
Query 16097 ATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt 16156
||||| || ||||| || || | || | || | | || || | || |
Sbjct 16036597 ATTAACGTGCAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGC 16036538
Query 16157 tCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT--- 16213
||||| ||| || | ||| ||||| || | ||| | || || ||| |||||
Sbjct 16036537 TCTATCCGAACGGCATTAATAATTATTTCCTTCACT-CTCTGCTT---GGAAGGTTTGTG 16036482
Query 16214 -AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272
| | |||||| ||||| | || ||||| ||||| || || || || || || || ||
Sbjct 16036481 GACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAAT 16036422
Query 16273 TAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332
| || || ||||| | | || ||||| || | ||||| || | ||| ||||| |
Sbjct 16036421 AAGTTCATTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGT 16036362
Query 16333 GGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392
||||| |||||||||||||| || ||||| || || ||||| | || | || || ||
Sbjct 16036361 CGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCC 16036302
Query 16393 GTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgtttAACA 16450
||| || || ||| | | | |||| | ||||| | ||| || | || |||
Sbjct 16036301 GTAGGTAGCCTCTTTGTCC--CCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACA 16036244
Query 16451 CAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAA 16510
|| ||| |||| | || || || | | | | |||||||| |||| || ||||
Sbjct 16036243 CAAGGCATTGTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAA 16036184
Query 16511 GTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCA 16570
|| || || || | ||| ||||| || ||||| || || ||||| || || | || |||
Sbjct 16036183 GTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCA 16036124
Query 16571 TAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCG 16630
|| || || | ||||| | || || ||||| | ||||| || | ||||||||
Sbjct 16036123 TAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCA 16036064
Query 16631 TTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCG 16690
|| ||||| ||||| || | ||||| || || || | ||| | ||| | | | ||
Sbjct 16036063 TTTACTATGCCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCC 16036004
Query 16691 TTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGT 16749
| | || | | || | || || || || || | ||| |||||||| | ||
Sbjct 16036003 TCAGGCTTCAGGGATT-CCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGT 16035945
Query 16750 CCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797
|||||| ||||| |||| || | |||||| | ||| || || | |||
Sbjct 16035944 CCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTA 16035897
>seq7786
Length=83011774
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || ||||||||| | | | || ||| |||| |
Sbjct 48108341 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 48108400
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|||||| || ||||| || ||||||||||||||||| |||||||| ||||| || |
Sbjct 48108401 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 48108460
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 48108461 CCATAAAATCAAAGGGATTTTCTG 48108484
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 48114630 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 48114689
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
| |||||||| || | ||| || | ||||||||||||||
Sbjct 48114690 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 48114732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462466488819200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |