Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7767 215 5e-51 seq7820 109 5e-19 seq7842 105 6e-18 seq7860 84.2 2e-11 >seq7767 Length=50048226 Score = 215 bits (238), Expect = 5e-51 Identities = 565/859 (66%), Gaps = 15/859 (2%) Strand=Plus/Minus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | ||||| |||| ||||| || ||||||||||| | Sbjct 16036763 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TC 16036709 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCA 14014 ||||||||||| ||||| ||||| || |||||||||||| | | || || || || Sbjct 16036708 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 16036649 Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074 ||||||| || | | | || | || | ||||||||| | || |||||| Sbjct 16036648 AAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTG 16036589 Query 14075 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134 |||||||| || || || || | || | | | || | || | | ||||| Sbjct 16036588 CAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 16036529 Query 14135 ACAGCCTCGTTTATAATAAT---CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGT 14191 || || | | ||||| || | | | | | || ||||| | || ||| Sbjct 16036528 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGT 16036472 Query 14192 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 14251 || || || | || ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 16036471 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 16036412 Query 14252 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 14311 ||||| | || ||||||| | ||||| || | ||| ||||| | || || || Sbjct 16036411 GAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 16036352 Query 14312 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14371 || |||||||| ||||| || || |||||||| | | | ||||| || | | || Sbjct 16036351 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 16036292 Query 14372 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 14431 | ||||| | |||| | ||||| || | || || || | | || |||||| Sbjct 16036291 TCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTC 16036232 Query 14432 TCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || | || || || | | |||| | ||||| | | | || || || ||||| || Sbjct 16036231 TCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGG 16036172 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | || ||||| ||||| || ||||||||||| || || | || ||||| ||||| | Sbjct 16036171 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGG 16036112 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 ||||||| || || ||| | ||| | || |||| |||||||| ||||| ||| Sbjct 16036111 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 16036052 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||||| | ||||| || |||| | || | ||||||| ||| ||| | || Sbjct 16036051 TCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 16035992 Query 14672 TTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14729 || | | ||| || ||||| |||||||| || || ||| |||||||||| || Sbjct 16035991 GATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAG 16035934 Query 14730 CAACAGCTTTTTTATACAT 14748 | ||||||| | |||||| Sbjct 16035933 CCTCAGCTTTCTCATACAT 16035915 >seq7820 Length=31847680 Score = 109 bits (120), Expect = 5e-19 Identities = 452/712 (63%), Gaps = 1/712 (0%) Strand=Plus/Minus Query 13929 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13988 |||| || |||||||||||||| || ||||||||||| ||||| ||| ||| ||||||| Sbjct 14843928 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATG 14843869 Query 13989 GATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGA 14048 ||||| | | | || || | |||||||||| | | || || || |||| Sbjct 14843868 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTACCTAAGTCAGTCTGCCATGA 14843809 Query 14049 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 14108 | |||||||| || | ||| || ||||| || || || || | || | | Sbjct 14843808 ATTCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAGCTTCGCGGGCAAGGCCT 14843749 Query 14109 TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCAT 14168 | | || || | ||||| || || | | | || || | | | | | | Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCATTGATAATTATTTCCTTCACTCTCTGCT 14843689 Query 14169 TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 ||||| || || ||||| || || | || ||||| | || | |||| Sbjct 14843688 CTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCT 14843629 Query 14229 CATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||||| |||||||| || || ||||| | | || ||||||| | | ||| || Sbjct 14843628 CATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTG 14843569 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 | ||| ||||| | || | || || ||||| | ||||| || |||||||| | Sbjct 14843568 AGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCC 14843509 Query 14348 ATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAt 14407 | | ||| || | | || | ||||| | | ||| ||||| || | Sbjct 14843508 ACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCC 14843449 Query 14408 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTA 14467 || || | | || |||||| || || | || || | | ||| ||||||| | | Sbjct 14843448 TTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAA 14843389 Query 14468 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCT 14527 | ||| || || ||| | || | ||| |||| ||||| || ||||||||||| || Sbjct 14843388 TCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCA 14843329 Query 14528 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCG 14587 || || || ||||| ||||| | ||||||| | | || ||| | | | | || Sbjct 14843328 ATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCTCC 14843269 Query 14588 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGT 14639 |||| |||||||| ||||| ||| |||| || ||||| || |||| |||| Sbjct 14843268 ACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGT 14843217 >seq7842 Length=42459490 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 7548345 CCACAACCCGTTCTCC 7548330 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 7549966 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7549908 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 7549907 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 7549848 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 7549847 CATAAAGTCAAATGGATTT 7549829 >seq7860 Length=13696022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 132204 CCCAAAAAGATG-CATAATGGAACAATAGAATACACAAGTATAGATATGCATAAAGGTGT 132262 ||| |||||||| || |||| | || |||| ||| || || || |||| || ||||| Sbjct 3634479 CCCCAAAAGATGTCACGATGGCATTATTGAATTCACCAGCATCAATGTGCACAATGGTGT 3634420 Query 132263 ATCCCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTATAATAAAATGGTTAGG 132322 ||||||| || || || ||||||||||| | || ||||| || || | || | | Sbjct 3634419 CGCCCCGTCAAGACGTGGTGATTTGGAAATCCTTGGTTATTGCATGATCCAGTGACTTAG 3634360 Query 132323 TGGTAAATTGCCATGGGAAAATGATTTAAAAAATTGTAAATATGTAATGGAGTCAAAGAT 132382 ||| | | || ||||| || |||| ||| | ||| ||||| | || || || || Sbjct 3634359 TGGCCATCTTCCTTGGGAGGATAATTTGAAAGACCCTAACTATGTTAGAGATTCCAAAAT 3634300 Query 132383 TAAATACATGAACGATATTGGAAATTTAATG 132413 || ||||| | |||||| | |||| ||| Sbjct 3634299 TAGATACAGAGAAAATATTGCAGATTTCATG 3634269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482298137192960