Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 4e-13 seq7767 84.2 2e-11 >seq9 Length=2205763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||||||| | ||| |||| ||| || || || ||||| || || || ||||| | | Sbjct 1749325 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 1749384 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| |||||||||||| | | || | || || || || Sbjct 1749385 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 1749444 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCG-- 18275 | ||| ||||| || |||| | || ||||| | ||| ||||||| ||||||| Sbjct 1749445 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1749503 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 1749504 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1749553 >seq7767 Length=50048226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || | |||||||| ||| Sbjct 33066754 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGC 33066813 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| ||||| || ||||| || | ||||||||||| ||| | Sbjct 33066814 TTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTG 33066873 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | || || ||| || || | ||||||| | || || || Sbjct 33066874 GCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCTTCCCCGTA 33066933 Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || ||||| ||||| || Sbjct 33066934 AGGGTTTTCACGAAAATCTGCATCTT 33066959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379307605736640