Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7870 120 3e-22 seq7767 98.7 9e-16 seq7782 93.3 4e-14 seq9 91.5 1e-13 seq7842 87.8 2e-12 seq7828 87.8 2e-12 seq7858 84.2 2e-11 seq7857 82.4 7e-11 >seq7870 Length=10551609 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 10326698 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 10326639 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 10326638 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 10326579 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 10326578 CCTGTCTCTGTCTGAGACTCAATGATGGC 10326550 >seq7767 Length=50048226 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| ||||| || Sbjct 33066959 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGATCCC 33066900 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 33066899 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 33066840 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 33066839 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACTTTGTCTGACTA 33066781 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| || || ||||||||||| || Sbjct 33066780 CAACATTCAAAAGGAGTCTACTCTTCATCTTGT 33066748 >seq7782 Length=35566003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| | |||||| |||| ||||| || Sbjct 14262709 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGAACATCACCCTCGAGGTTGAGCCCAGT 14262650 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||| | | | ||||| |||||| Sbjct 14262649 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGACATCCCGCCTGACCAG 14262590 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAG 31346 |||||||| || || || ||||||||| |||||| Sbjct 14262589 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAG 14262556 >seq9 Length=2205763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT--GAACCGT 31250 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 1749553 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGTCGAGCCCA 1749494 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | |||||| | ||| |||||||| ||| | ||||| |||| Sbjct 1749493 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACC 1749434 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| | || || ||||||||| ||||||| ||| || || |||| Sbjct 1749433 AGCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATA 1749374 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || ||||| || || || || |||| ||| | || |||| || Sbjct 1749373 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTACGGGGTGG 1749325 >seq7842 Length=42459490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || ||||| || |||||||| || |||||| ||||||| ||| | Sbjct 7548345 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCAATATTCTGGCTC 7548404 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||||||||||||||||||| ||||| |||||| ||| || Sbjct 7548405 AAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 7548445 >seq7828 Length=21597463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || ||||| |||| |||||||| Sbjct 14213589 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 14213530 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| | || | || | | |||||||| | || || || Sbjct 14213529 TCGGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 14213470 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC-TATGAGCGATTA 31368 |||||| | || || || |||||||| || ||||||| | | | | | || || || Sbjct 14213469 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTCCTTTGTCTGACTA 14213411 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 14213410 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 14213369 >seq7858 Length=29646629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||| | || || || || || || || |||||| |||| |||||| || | Sbjct 12424960 TGCAGATTTTCCTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGCCTGAACCCTCGG 12424901 Query 31254 ACAGTGTCGAAACGGT-CAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 | | | |||| || || | ||| | ||| |||||||| | || || || ||| Sbjct 12424900 ATACAATAGAAAATGTACAGGCCAAGATTCA-GGATAAGGAAGGAATTCCTCCTGATCAG 12424842 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || | |||||||| || ||||| | | ||| ||| || || || || Sbjct 12424841 CAGAGACTGATCGTTGCTGGCAAGCAACTGGAAAA-TGGATGCACTTTGTCTGACTACAA 12424783 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 12424782 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 12424744 >seq7857 Length=43258702 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || ||||| | || || || ||||| |||| | |||||| Sbjct 24177952 AAGATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCC 24178011 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | ||| || || | || ||| |||||||| | || || || Sbjct 24178012 TCGGATACAATACAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 24178071 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | | || || |||||||| || ||||||| | | | ||| || || || Sbjct 24178072 CAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACTCTGTCTGACTA 24178130 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| |||||| || || ||||||||||| || | ||||| Sbjct 24178131 CAACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACT 24178172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445722536586240