Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7767 95.1 2e-14 seq7842 84.2 4e-11 >seq7767 Length=50048226 Score = 95.1 bits (104), Expect = 2e-14 Identities = 293/449 (65%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||||| |||| | ||||||||| || ||||||||||||||| |||| | || || | Sbjct 16036304 GGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGAC 16036363 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 || |||||| ||||||| | | | ||||||| | || | |||||||| | || Sbjct 16036364 GATATTCTGGCTCAAGAAACGTGACCTGATGCCTGGCCCCATGTTTTCCAATGAACTTAT 16036423 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 | || || || ||| | || | |||||||| ||| || |||| ||| | | || Sbjct 16036424 TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGGT 16036480 Query 102088 TGATACCCCAT-CAAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAA 102145 | | || | |||| ||| || | ||||| | | | | ||||| || || || Sbjct 16036481 CCACAAACCTTCCAAGCAGAGAG--TGAAGGAAATAATTATTAATGCCGTTCGGATAGAG 16036538 Query 102146 CAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG 102205 || | || ||||| | || |||| | || | | || ||||| |||| ||| ||| Sbjct 16036539 CAGGGGTTCCTCACGGAGACCTTGCCCCTGAAGCTCATTGGGATGAATTGCACGTTAATG 16036598 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCAC 102265 | |||| ||||| ||||||||| | ||| || | || | || | | ||| Sbjct 16036599 AAGCAGTGTATTGAGTTTGTGGCACACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTT 16036658 Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325 | | || || || || |||||||| |||||||| || | ||| ||| Sbjct 16036659 TTCAGAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTGG-----AAGGGAAAC 16036713 Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 || ||||| |||||||| | |||||||| Sbjct 16036714 TTCTTTGAGAAGAGAGTAGGTGAGTATCA 16036742 >seq7842 Length=42459490 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || |||||||| || ||||||||||||||| |||| | || || || || |||| Sbjct 7548340 TTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCAATATTCT 7548399 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 7548400 GGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 7548445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989484190557760