Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq7767 318 7e-82
seq7870 125 9e-24
seq7842 114 2e-20
seq7735 111 2e-19
seq7786 102 1e-16
>seq7767
Length=50048226
Score = 318 bits (352), Expect = 7e-82
Identities = 642/949 (68%), Gaps = 34/949 (4%)
Strand=Plus/Minus
Query 33231 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCT-TGAGACATAACTCCCA 33288
||||| ||| |||||| |||| || | |||| ||| | || | ||||| |||||||
Sbjct 16036807 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCA 16036748
Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348
| | || || ||||| || | || || || || || | ||||||| ||| ||||
Sbjct 16036747 TCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TCCCTTCCAGTGAAATAT 16036693
Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408
| |||||||| ||||| ||||| || || ||| || ||| || | || |
Sbjct 16036692 TCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCA 16036633
Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468
| | || | ||| || || || ||| | ||||| | |||||||| || ||||
Sbjct 16036632 TAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTGCAATTCATCCCAATGA 16036573
Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528
| || | || | | | | || || || | || || || || ||||| ||
Sbjct 16036572 GCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATT------AA 16036519
Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT-----------AAATGTTTAAACAT 33577
||| | | || |||||||| || || || | ||||| |||||
Sbjct 16036518 TAATTAT-----TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGTTTGAACAT 16036464
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|| || || || || ||||| | |||||| ||||| ||||| | ||| || |||||| |
Sbjct 16036463 CAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACAT 16036404
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
| | || ||||| ||| |||| || || ||||| ||||| | || || || || |||||
Sbjct 16036403 GGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAA 16036344
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTC 33754
|||||||||||| || ||||||||| | | || | || || || | | | ||||
Sbjct 16036343 GAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTC 16036284
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
|||| | ||||| || |||||||| |||||||||||||| || || | |||
Sbjct 16036283 CCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTCTCGAGGGC 16036224
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|| |||||| | | |||| || ||||||||||||||| || || | ||||| ||
Sbjct 16036223 GTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGGAGACTGTA 16036164
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||| || ||||| |||||||| ||||| || | || || |||||||| | || || ||
Sbjct 16036163 CATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGGGCTTCTGT 16036104
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
|||||| |||||| | ||| || || | || |||||||| ||||| |||||||| |
Sbjct 16036103 AATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGG 16036044
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC- 34053
||||| || |||| || || || ||| ||| | || || || | || |||||
Sbjct 16036043 CGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCT 16035985
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| | || || || || | |||||| ||||| |||||||||| || ||||| || |
Sbjct 16035984 GGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTT 16035925
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
| | |||||| | ||| || ||||| || || ||||| || |||||
Sbjct 16035924 TCTCATACATCTGCCAAATATCATGGTACCCGACAGGGAAGATGACAAA 16035876
>seq7870
Length=10551609
Score = 125 bits (138), Expect = 9e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| |
Sbjct 10335168 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 10335109
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 10335108 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 10335049
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 10335048 CTGTTTCTTATACCATA 10335032
Score = 120 bits (132), Expect = 4e-22
Identities = 129/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| |
Sbjct 10337845 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 10337786
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 10337785 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 10337726
Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283
| |||| ||||||||| | ||| ||||||| | |||| | || || ||||
Sbjct 10337725 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 10337675
Score = 109 bits (120), Expect = 7e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || |||||||| || | || || || || | ||| || || || || || || |
Sbjct 10330155 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 10330096
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||||| |||||| || || ||||| || || ||||| ||||
Sbjct 10330095 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 10330036
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || || || || || || | ||| |
Sbjct 10330035 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 10329976
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 10329975 ATTTATTTGA 10329966
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 10325159 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 10325100
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || |||||||| ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 10325099 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 10325040
Query 63383 CGGTTCCAAGTATATGGC 63400
|| |||| ||| || ||
Sbjct 10325039 AGGCTCCAGGTAAATAGC 10325022
>seq7842
Length=42459490
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || |
Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| || |||||||| |
Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346
Query 33724 C 33724
|
Sbjct 7548345 C 7548345
>seq7735
Length=17007418
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| | ||| || | ||||| || || |||||||||| || |||
Sbjct 11867406 GTTACTTTCTATGATGTGTATATTATTCTCCAAGCATTTATACTGACTACTGCTGTATTT 11867465
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||||||||| || |||||||||||||||||| ||| | ||||
Sbjct 11867466 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGTAAATTTGGAGCAGG 11867524
Score = 86.0 bits (94), Expect = 8e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||||||||||||||| |||||||||| ||||| ||||| || ||||| ||||||
Sbjct 11844866 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 11844925
Query 188232 ATACGAATGG 188241
|| ||| |||
Sbjct 11844926 ATCCGACTGG 11844935
>seq7786
Length=83011774
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || |||||||||||||||||||| || || | || ||
Sbjct 48121152 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 48121211
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || ||||| || ||||| || |||||||| |||||||| ||
Sbjct 48121212 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 48121270
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| | ||||| || ||||||| ||||| ||||||||| ||||| || ||| |
Sbjct 48132204 ACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 48132263
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
|||||||||||||| || |||||||
Sbjct 48132264 TATTGGATTGGGAAGATGACAAATC 48132288
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || |||| || ||||||
Sbjct 48126738 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 48126797
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
|| || || || | | | || || ||||| | | || ||| || ||||
Sbjct 48126798 TACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 48126846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629755625948160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |